Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00213 ATGGGGAGGCCCTCCAAGACGCAGGTTTCGAACGAATTTTCCTCCGAAGAGGAAAAGGAGGAGGCCTCCGCCGCCGCCGCCAACCACGAGATCGAAGATGACGACGAGGAGCTCGAAGCGGTGGCTCGCTACGTTAGCTCCGATGACGACGATAATTCGCCGGATGAAGCCGCTGAAGACGACGACGAGGATAAACAGGATGAGAGTAATGTTGATCCGGAAGTTAGCAAGCGTGAGAAGGCCAGATTGAGAGAAATGCAACAACTGAAGAAACAGAAAGTTCAGGAGATATTGGATGCACAAAATGCGACCATTGATGCTGATATGAATAATAGAGGAAAGGGCAGATTGAACTATCTCCTACAGCAAACTGAGCTGTTTGCTCATTTTGCCAAGGGTGACCAATCTTCTCAAAAGAAGGCAAAGGGAAGAGGTCGCCATGCATCAAAAGTAACTGAAGAAGAGGAAGATGAAGAATACCTTAAAGGGGAAGAAGATGGCTTAGCAAATACACGGTTGGTGACTCAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGCATAAATGGTATTCTGGCAGATGAAATGGGGCTGGGCAAAACATTACAAACAATATCTTTGTTAGGCTACTTACATGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGTGCTGTAAAGTTCCTTGGCAATCCTGACGAAAGGAAGCACATAAGAGAGGAGTTACTCGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATAATTATTGACGAGGCCCATCGAATCAAGAATGAGAACTCACTCTTGTCCAAAACAATGAGGCTATACAATACAAACTATCGACTCCTCATAACTGGCACACCATTACAGAACAATCTTCACGAACTCTGGGCTCTTCTCAACTTTCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTGGAGGTTGTGAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTACGTAAATGCTGCAATCACCCATATCTCTTCCAGGGTGCTGAACCTGGCCCTCCCTTTACAACAGGAGACCATCTCATTACAAATGCTGGTAAAATGGTCCTACTGGATAAGTTACTTCCTAAACTAAAAGAACGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTCATGTTTTGTGGATACCAATATTGTCGCATTGATGGCAATACTGGTGGAGATGATCGAGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCTTGCTATCTACTCGCGCTGGAGGCCTTGGCATTAATCTTGCTACAGCTGATGTTGTTATTCTTTATGACAGTGACTGgaacccacaagttgacctgcaagctcaggatcgtgctcataggattggtcaaaagaaagaagtTCAAGTTTTCCGATTTTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCTCTTGATGCTCTGGTGATTCAGCAAGGGCGATTAGCTGAACAGAAGACTGTTAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGACGATGAGAATGAAGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAATTGGGTCGAGCCACCAAGAAGAGAACGGAAGCGCAAGCATGACTTCCAGTTTTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGATACCTCATGCAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAGAGATGGGAGTTCCATTGACTGCCGAAGAGTTAGAAGAAAAGGAGCAGTTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGAAAAACACAAGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGGCAAGAATATCCCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAGGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGAAAGTTATACAATGAAGAATGTGACCGATTCATGATATGTATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGAATGTCGCCCTTGTTTCGATTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAAATTACAAGGAGGTGTGACACCCTCGTTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGGGGAAGAAGAAAAAATAA 3090 0.4117 MGRPSKTQVSNEFSSEEEKEEASAAAANHEIEDDDEELEAVARYVSSDDDDNSPDEAAEDDDEDKQDESNVDPEVSKREKARLREMQQLKKQKVQEILDAQNATIDADMNNRGKGRLNYLLQQTELFAHFAKGDQSSQKKAKGRGRHASKVTEEEEDEEYLKGEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFCGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDENEENKFDFKKIVSENWVEPPRRERKRKHDFQFFNTHRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEMGVPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKGIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQEITRRCDTLVRLVEKENQEYDERERQARKEKKIAAKSMTPSKRSMPRQSESPSLKKRKQLTMDDYLSSGKKKK 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00213 1029 Pfam Helicase conserved C-terminal domain 487 599 IPR001650 -
Gma17g00213 1029 MobiDBLite consensus disorder prediction 51 69 - -
Gma17g00213 1029 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 741 807 IPR036306 GO:0003677|GO:0006338|GO:0031491
Gma17g00213 1029 CDD SF2_C_SNF 485 610 - -
Gma17g00213 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 682 IPR027417 -
Gma17g00213 1029 MobiDBLite consensus disorder prediction 135 156 - -
Gma17g00213 1029 Coils Coil 962 989 - -
Gma17g00213 1029 Coils Coil 83 103 - -
Gma17g00213 1029 ProSiteProfiles SANT domain profile. 804 856 IPR017884 -
Gma17g00213 1029 CDD DEXHc_SMARCA1_SMARCA5 181 401 IPR044754 GO:0005524
Gma17g00213 1029 CDD SANT 808 852 IPR001005 -
Gma17g00213 1029 MobiDBLite consensus disorder prediction 132 162 - -
Gma17g00213 1029 Gene3D - 185 400 IPR038718 -
Gma17g00213 1029 PANTHER SNF2/RAD54 HELICASE FAMILY 744 1029 - -
Gma17g00213 1029 Gene3D - 805 859 - -
Gma17g00213 1029 SUPERFAMILY Homeodomain-like 860 982 IPR009057 -
Gma17g00213 1029 Pfam SNF2-related domain 197 464 IPR000330 GO:0005524|GO:0140658
Gma17g00213 1029 Gene3D iswi atpase 860 892 - -
Gma17g00213 1029 PANTHER SNF2/RAD54 HELICASE FAMILY 8 743 - -
Gma17g00213 1029 SMART sant 907 968 IPR001005 -
Gma17g00213 1029 SMART sant 805 854 IPR001005 -
Gma17g00213 1029 Gene3D - 405 697 IPR027417 -
Gma17g00213 1029 MobiDBLite consensus disorder prediction 1 80 - -
Gma17g00213 1029 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 489 640 IPR001650 -
Gma17g00213 1029 MobiDBLite consensus disorder prediction 976 993 - -
Gma17g00213 1029 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 744 1029 - -
Gma17g00213 1029 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 8 743 - -
Gma17g00213 1029 MobiDBLite consensus disorder prediction 12 29 - -
Gma17g00213 1029 SUPERFAMILY Homeodomain-like 808 858 IPR009057 -
Gma17g00213 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 399 IPR027417 -
Gma17g00213 1029 MobiDBLite consensus disorder prediction 976 1029 - -
Gma17g00213 1029 MobiDBLite consensus disorder prediction 1005 1029 - -
Gma17g00213 1029 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 361 IPR014001 -
Gma17g00213 1029 Gene3D - 893 996 - -
Gma17g00213 1029 SMART helicmild6 515 599 IPR001650 -
Gma17g00213 1029 Pfam SLIDE 862 972 IPR015195 GO:0003677|GO:0005634|GO:0006338
Gma17g00213 1029 SMART ultradead3 180 372 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00213 Gma-Chr17 1738493 1748083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00213 205 626 RAD5 or RAD16-like Gene Family AT1G02670 27.921 2.06e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma17g00213 SNF2_N 1.5e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00213 K11654 - gmx:100814442 1948.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00213 17 1738493 1748083 Gma17g00213 17 1738493 1748083 ECH
Gma17g00213 17 1738493 1748083 Gma15g00914 15 7611426 7619337 PCT
Gma17g00213 17 1738493 1748083 Gma13g01898 13 34299060 34307642 PCT
Gma15g00914 15 7611426 7619337 Gma17g00213 17 1738493 1748083 PCT
Gma13g01898 13 34299060 34307642 Gma17g00213 17 1738493 1748083 PCT