Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00211 ATGGAAGGCTCTGTCAACGAACGTCTTCATTTTGGGAAGATTGGATATGGATGCAATCATTACAGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGAGGCCGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTATTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAGTTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGTTATGCAGTTGGTCTGCATGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGATGTCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACCTGGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACCGTCATGCCTCAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACCCGCACAGTTGCACCTCCAGTTCTTCCCCAATGA 804 0.4229 MEGSVNERLHFGKIGYGCNHYRRRCRIRAPCCNEIYSCRHCHNEAASLLKNPFDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDVEKEQFHCDDCGICRVGGRDNFFHCKKCGSCYAVGLHDNHLCVENSMRHHCPICYEYLFDSLKDVIVMKCGHTMHHECYLEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPQDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRTVAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00211 267 Gene3D - 227 262 - -
Gma17g00211 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Gma17g00211 267 SUPERFAMILY RING/U-box 152 202 - -
Gma17g00211 267 PANTHER BNAC09G39170D PROTEIN 1 267 - -
Gma17g00211 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Gma17g00211 267 SUPERFAMILY CHY zinc finger-like 16 87 IPR037274 GO:0008270
Gma17g00211 267 Pfam Ring finger domain 152 195 IPR001841 -
Gma17g00211 267 SMART ring_2 153 195 IPR001841 -
Gma17g00211 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 267 - -
Gma17g00211 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Gma17g00211 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Gma17g00211 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Gma17g00211 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Gma17g00211 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00211 Gma-Chr17 1727719 1731155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00211 16 266 C2H2 Transcription Factor Family AT3G18290 40.856 3.12e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00211 K10144 - gmx:100812839 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00211 17 1727719 1731155 Gma17g00211 17 1727719 1731155 ECH
Gma17g00211 17 1727719 1731155 Gma15g00917 15 7635482 7639263 PCT
Gma17g00211 17 1727719 1731155 Gma13g01895 13 34279033 34282580 PCT
Gma15g00917 15 7635482 7639263 Gma17g00211 17 1727719 1731155 PCT
Gma13g01895 13 34279033 34282580 Gma17g00211 17 1727719 1731155 PCT