Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00209 ATGCAAGGCCACGCTGAAACTAATAACTCTATCATGGCACCGCTCTCTCAAATCCCACCTTCTTCTTCTCTTCACCCTTCAAACATTGCTGAAACGGGTAACATCTACACCACCACCTCCAGAAAGCGTGTTAAGAAAATGGACCACACCAATTGCGAGAGCCTCAACGTGGAACGTGAAAGAAGGTCGAAGATGACTCAAATGTTCACTCAGCTTCAAACCACTGTCCCTGGTGTCTTACCTCAGGCTACAAGGGAAGTGATTATAAACGAGACAATTAAGTACATTAAGGAGCTTGAGATGAAGATGCAAAAGCTGGAGGAGTTGAAGGAGTCAATGAAAGAAGGGTCCATATTGCTTGCATGTGGTAACAACAACATGAATTGCTCCGTCACGGTTTGTCTCTGCTAA 411 0.4477 MQGHAETNNSIMAPLSQIPPSSSLHPSNIAETGNIYTTTSRKRVKKMDHTNCESLNVERERRSKMTQMFTQLQTTVPGVLPQATREVIINETIKYIKELEMKMQKLEELKESMKEGSILLACGNNNMNCSVTVCLC 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00209 136 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 7 134 - -
Gma17g00209 136 MobiDBLite consensus disorder prediction 1 30 - -
Gma17g00209 136 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 123 IPR036638 GO:0046983
Gma17g00209 136 SMART finulus 55 105 IPR011598 GO:0046983
Gma17g00209 136 Pfam Helix-loop-helix DNA-binding domain 57 100 IPR011598 GO:0046983
Gma17g00209 136 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 134 - -
Gma17g00209 136 Gene3D - 36 128 IPR036638 GO:0046983
Gma17g00209 136 Coils Coil 89 116 - -
Gma17g00209 136 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00209 Gma-Chr17 1718587 1719161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00209 20 107 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.789 3.09e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma17g00209 HLH 9.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00209 K15589 - gmx:102663211 243.047