Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00205 ATGGGGTGTGTGTTTGGGAAAGAAGCATCAAAGAAGAAAGAGGAAGTGGAAGTTGCAAGAGCAGAAGATGGTGTGGCTCAGAACAGTGGGAATGTGAAGGTGGGTGGAGAAGAGGAGAAGAGCAAGCGCCCAAAAGGGGAGAGAAGGCGATCTTCGAAGCCGAATCCGAGGTTGAGCAATCCACCTAACCATGTACATGGTGAGCAAGTAGCTGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATTAATGGATTGGTCCCTAGAAGAGCTGACACTTTTGAGAAGCTTAATAAGgttggacaaggtacatatagcaatgtttacaaagcaaaggatactttgacagggaaaattgttgccctaaagaaggtccgctttgacaatttagagcctgagagtgtgaaattcatggctagagagattcttattctgcgccatctggatcatcccaatgttgtcaaactggaaggtttggtgacttcaaggatgtcatgcagtttgtaccttgtctttgaatacatggatcatgatttggctggacttgctacaagccccacaattaagttcacagagtctcaggttaaatgttacatgcatcagctactttctggattggaacactgtcacaaccgtcatgtgctgcatcgtgatataaaggggtcaaatcttctcattgacagtgaaggaattcttaggattgctgattttggattagcttccttcttcgatcctaatcacaagcaccctatgacaagcagggtggttactttatggtatcgacctccagaacttctccttggagccactgactatggtgtaggagtggacctctggagtgctggctgcattcttgctgaattgttggctgggaagcctattatgcctggtcgaaccgaggtggagcagctacataagatatttaagctttgtggttctccttctgacgagtattggaaaaaattaaagttgccacatgctaccatttttaagccccgaatatcatacaagcggtgcatagcagagacatttaagaatttcccagcatcatccctgccactaattgagatccttctcgcaatcgatccagctgaacgtcaaactgccacagatgcTTTGCATAGTGAATTCTTTACATCAAAACCTTATGCCTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCTGCTGGCAAAGCTAATGCTGCTGGTGTCAAGAAATCACGTCCACGTGATCGAGGTGGAAGGGGAATTTCAGTTCCAGATTCCAATGCTGAGTTGCAAGCAAATATTGATAGATGGCGACTGGTAACGCATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCTCACGAAGATGGAACTCTTGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAATTTTCGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTGTCATATCCTAAAGCAAATTTCCAGACCTGGTCTGGCCCATTGGTGGAACCTAGTGTGGATGCACCAAGGAGAAAGAAGAACATGGCAGGGAATGGGCACAGACAATCAAAGAAGGATTCTTATAGATAG 1641 0.2334 MGCVFGKEASKKKEEVEVARAEDGVAQNSGNVKVGGEEEKSKRPKGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLNKVGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVVKLEGLVTSRMSCSLYLVFEYMDHDLAGLATSPTIKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDSEGILRIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKLKLPHATIFKPRISYKRCIAETFKNFPASSLPLIEILLAIDPAERQTATDALHSEFFTSKPYACEPSSLPKYPPSKEMDTKLRDEEARRLRAAGKANAAGVKKSRPRDRGGRGISVPDSNAELQANIDRWRLVTHANAKSKSEKFPPPHEDGTLGYPLGSSHHMDPIFDPPDVPFSSTNLSYPKANFQTWSGPLVEPSVDAPRRKKNMAGNGHRQSKKDSYR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00205 546 Pfam Protein kinase domain 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00205 546 MobiDBLite consensus disorder prediction 7 21 - -
Gma17g00205 546 MobiDBLite consensus disorder prediction 523 546 - -
Gma17g00205 546 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00205 546 Gene3D Transferase(Phosphotransferase) domain 1 180 420 - -
Gma17g00205 546 SUPERFAMILY Protein kinase-like (PK-like) 92 386 IPR011009 -
Gma17g00205 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Gma17g00205 546 MobiDBLite consensus disorder prediction 1 68 - -
Gma17g00205 546 MobiDBLite consensus disorder prediction 462 546 - -
Gma17g00205 546 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Gma17g00205 546 MobiDBLite consensus disorder prediction 415 444 - -
Gma17g00205 546 MobiDBLite consensus disorder prediction 498 517 - -
Gma17g00205 546 PANTHER CYCLIN-DEPENDENT KINASE 32 531 - -
Gma17g00205 546 PANTHER CELL DIVISION PROTEIN KINASE 32 531 - -
Gma17g00205 546 Gene3D Phosphorylase Kinase; domain 1 85 179 - -
Gma17g00205 546 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00205 546 CDD STKc_CDK9_like 97 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00205 Gma-Chr17 1688063 1692170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00205 92 419 Core Cell Cycle Gene Families AT5G10270 51.744 1.05e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma17g00205 Pkinase 1.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00205 K08819 - gmx:100791757 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00205 17 1688063 1692170 Gma17g00205 17 1688063 1692170 ECH
Gma17g00205 17 1688063 1692170 Gma15g00925 15 7687500 7691792 PCT
Gma17g00205 17 1688063 1692170 Gma13g01888 13 34242191 34247028 PCT
Gma15g00925 15 7687500 7691792 Gma17g00205 17 1688063 1692170 PCT
Gma13g01888 13 34242191 34247028 Gma17g00205 17 1688063 1692170 PCT