Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00204 ATGATTGAAGTGCAAGCAAATGCCATGGAGCAGAGTTGGTGGGCCAATATGCCTCACGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAATCGTCGGAGTCCACGTGGCCGCTGCGGAGGAGCGTCGTGGCTTGTGGCGGAGTGTGCCGCACCTGGAGGAGGCTCATCGTCAAGGAGATTGTCAAGCCACCTCAATTCTCTTCCAACATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCGAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGCCTCACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCCCTAGTAGCTGATGATGGCAAGTTCCTTCTGGCTGCACGCAAGTTCAGACGCCCTACCTGCACAGATTATATTATCTCCCTTGATGCAGATGATATGTCCAGAGAAAGCAATGCCTATGTTGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTTACAATCTACGATAGAAAAAGTTGTTCCACTGAGCTGGTGGTGAATTCAAAACAAGTTTCACCTAGGCCCAGGGTCCCAACAGGCAACTATCCAGTTGCTCACATCTCATATGAACTGAATGTACTAGGCTCCAGGGGCCCAAGGAGAATGCACTGTGTCATGGATACCATTCCTGCTTCTGCTATTGAACCAGGAGGGGTAGCCGTAGCAGCCCCATCACAGACTGATTTTTCTGTTAGTAACAGAGATACTTCATTCCCATTTTTTCAGACAAACTCAACTAGTCTGGAAAACTCCATATCTGGAGACCAGAGCAATAAAAAAGATGATGTGCTAGTGTTGAGAAACAAGGCTGCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTAACAATTGCTTCAGTTAAAAACTTTCAGCTGGCTGTTTCACCAGAAAATGGACATGCTGGACTGCAAGAGGATGAGGTCATCCTCCAATTTGGAAAAATTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAAGCATTTGCAATCTGCCTCAGCAGCTTCGCTACCACAGTTGCTTGCGAATGA 1089 0.4702 MIEVQANAMEQSWWANMPHELLREVLLRIESSESTWPLRRSVVACGGVCRTWRRLIVKEIVKPPQFSSNITFPISLKQPGPREHLLQCFIRRNSASQTYYLFLSLSSALVADDGKFLLAARKFRRPTCTDYIISLDADDMSRESNAYVGKLRSNFLGTKFTIYDRKSCSTELVVNSKQVSPRPRVPTGNYPVAHISYELNVLGSRGPRRMHCVMDTIPASAIEPGGVAVAAPSQTDFSVSNRDTSFPFFQTNSTSLENSISGDQSNKKDDVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLAVSPENGHAGLQEDEVILQFGKIGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00204 362 SUPERFAMILY Tubby C-terminal domain-like 64 362 IPR025659 -
Gma17g00204 362 ProSitePatterns Tub family signature 1. 292 305 IPR018066 -
Gma17g00204 362 PANTHER TUBBY-RELATED 5 362 - -
Gma17g00204 362 SUPERFAMILY F-box domain 4 57 IPR036047 GO:0005515
Gma17g00204 362 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 5 362 - -
Gma17g00204 362 Pfam F-box domain 14 56 IPR001810 GO:0005515
Gma17g00204 362 Gene3D Tubby Protein; Chain A 73 362 IPR025659 -
Gma17g00204 362 PRINTS Tubby superfamily signature 131 147 IPR000007 -
Gma17g00204 362 PRINTS Tubby superfamily signature 147 171 IPR000007 -
Gma17g00204 362 PRINTS Tubby superfamily signature 189 216 IPR000007 -
Gma17g00204 362 PRINTS Tubby superfamily signature 274 291 IPR000007 -
Gma17g00204 362 PRINTS Tubby superfamily signature 292 308 IPR000007 -
Gma17g00204 362 PRINTS Tubby superfamily signature 319 338 IPR000007 -
Gma17g00204 362 PRINTS Tubby superfamily signature 340 362 IPR000007 -
Gma17g00204 362 Pfam Tub family 76 357 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00204 Gma-Chr17 1684913 1687232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00204 4 362 TUB Transcription Factor Family AT2G47900 64.516 2.89e-170 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma17g00204 Tub 1.9e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00204 K19600 - gmx:100805161 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00204 17 1684913 1687232 Gma17g00204 17 1684913 1687232 ECH
Gma17g00204 17 1684913 1687232 Gma15g00927 15 7708576 7713579 PCT
Gma17g00204 17 1684913 1687232 Gma13g01886 13 34222453 34227577 PCT
Gma15g00927 15 7708576 7713579 Gma17g00204 17 1684913 1687232 PCT
Gma13g01886 13 34222453 34227577 Gma17g00204 17 1684913 1687232 PCT