Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00194 ATGGGAAGGTATCGAAGCCGGAGCAGGAGCTATAGCCCCCGGCGGCGAAGCAGGAGCCCACCGGCACCGCGCGGACGGAACCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCTTACAGAGACCGCCGCTCACCTCTTCCTTCCGGCTTGCTTGTTCGCAATCTTCCCCTTGATGCCAGgcctgaggatcttaggatcccatttgagcgctatggtcctgtgaaggatgtttatctacctaaaaattactacactggtgagcctcgcggctttggatttgtgaaatatcgatatggtgaagatgcagctgaggcaaagcaacatcttaatcatactatcattggtggacgtgaaataaggattgttttcgctgaggaaaacaggaaaactcctcaagaaatgcgtGTTAACACTCGAGGAAGTGGTCGATATGGAGGTGGTAGAAGGAGGAATCATACTAGATCCCCACGACGCCGATATCGTTCATATTCTCGGTCTCCATCACCAGCTAGGGATGATTCAAGATAA 531 0.3239 MGRYRSRSRSYSPRRRSRSPPAPRGRNRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRVNTRGSGRYGGGRRRNHTRSPRRRYRSYSRSPSPARDDSR 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00194 176 MobiDBLite consensus disorder prediction 25 43 - -
Gma17g00194 176 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 172 - -
Gma17g00194 176 MobiDBLite consensus disorder prediction 146 162 - -
Gma17g00194 176 MobiDBLite consensus disorder prediction 1 47 - -
Gma17g00194 176 Gene3D - 26 168 IPR012677 -
Gma17g00194 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 121 IPR000504 GO:0003723
Gma17g00194 176 MobiDBLite consensus disorder prediction 130 176 - -
Gma17g00194 176 SMART rrm1_1 50 123 IPR000504 GO:0003723
Gma17g00194 176 MobiDBLite consensus disorder prediction 1 22 - -
Gma17g00194 176 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 172 - -
Gma17g00194 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Gma17g00194 176 SUPERFAMILY RNA-binding domain, RBD 51 155 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00194 Gma-Chr17 1606562 1611643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00194 41 136 Eukaryotic Initiation Factors Gene Family AT1G22760 27.551 1.05e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00194 K12900 - gmx:100788749 237.654