Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00183 ATGGGTTGTGTCCATGGCAAGTGTTGCTGTGGTGACAGTTCTTCATCAGATGATGGTTCTAGGGATTACCGAGAACTTGACTTCATTAATGGCCACAGGAAGAACGTGCTCGCTCAGCGGTCATTGAAGCATGTTCCTGTTCCTTCCCACAACTTCATTTTGGAATACACTTTTCTCACTCAGCGGGGGTACTACCCTGACTCACCTGATAAAGAAAACCAAGATAGTTTCTGCATTACTACACAACTCCAAAGTAACCCCAATGTCCATTTCTTTGGTGTCTATGATGGGCATGGCCAATTTGGTAGCCAGTGTTCCAATTTCGTTAAGGATAGGTTGGTAGAGAAGTTGTCAAATGACCCTGCATTGTTGGAGGACCCTGCTCAGGCTTACAATTCTGCATTCGTGGCAACGAATCAAGAATTGCGTAGTACTAGTGAGATTGATGATTCTATGAGTGGCACCACCGCGATTACGGTGCTTGTTATTGGTGACACTCTTTATGTTGCTAATGTTGGTGATTCAAGAGCGGTGCTGGCCGTTAAGGATGGCAATCACATTGTTGCCCAGGACTTGTCCTCTGACCAGACGCCATTTCGGAGAGATGAATATCAGAGAGTGAAACTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGCTAAAGGATCCAGATATCCAGCATTGGGGTGATGAAGAGAGTTGGGGTGGTGATCCTCCTAGATTGTGGGTTCCTAATGGGATGTATCCTGGAACTGCATTTACAAGGAGTATAGGGGATAGTTTGGCGGAGACTGTTGGTGTCATTGCTATTCCGGAGGTGAAAGCGGTTCAGCTTACACCTAATCATCTTTTCTTTGTTGTGGCAAGTGATGGCATATTTGAATTCCTGACAAGCCAAACTGTTGTTGATATGGCAGCAAGCTATATGGATCCTCATGATGCATGTGCAGCTATTGCAGAGAAGTCGTATAAACTATGGTTGGAACTTGAGAACAGAACAGATGATATAACAATCATCATTGTTCAGATCAAAGGTCTTTCTAATTCAGGTACATCTGGAGTTGGATCAGATGAGATCAATGGTGGTACTGTAATGAATTTCAGGACAGGAACTCCTGAGATATCTGCTACCCCTGGATCTAATGTTTATTGTTCAGTCAGAACCAGTTTCTCTGATTTGCACTCCGGTCAGGATGCGGCTTCAGTGACGAGTGCAGTcATAGAGGTTCACTCTCCAGCATTGATTGAAGAGAGAGGCTTTACTGAAGCTTCACCAAGTCTCTTTGCAGTTTCTACCAAGTGGTATATTTCCACGTTCCATCTTCCTGAGCATTGTGCATTACTGTTGTATATTTACTGGTCCCTACATTTTAGGCTGCCAACTTGCCAGTTTGAGGACTTCGTTAAATGTGGGGAAAAAAATGAAATGACTG 1441 0.4421 MGCVHGKCCCGDSSSSDDGSRDYRELDFINGHRKNVLAQRSLKHVPVPSHNFILEYTFLTQRGYYPDSPDKENQDSFCITTQLQSNPNVHFFGVYDGHGQFGSQCSNFVKDRLVEKLSNDPALLEDPAQAYNSAFVATNQELRSTSEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNHIVAQDLSSDQTPFRRDEYQRVKLCGARVLSVDQVEGLKDPDIQHWGDEESWGGDPPRLWVPNGMYPGTAFTRSIGDSLAETVGVIAIPEVKAVQLTPNHLFFVVASDGIFEFLTSQTVVDMAASYMDPHDACAAIAEKSYKLWLELENRTDDITIIIVQIKGLSNSGTSGVGSDEINGGTVMNFRTGTPEISATPGSNVYCSVRTSFSDLHSGQDAASVTSAVIEVHSPALIEERGFTEASPSLFAVSTKWYISTFHLPEHCALLLYIYWSLHFRLPTCQFEDFVKCGEKNEMT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00183 480 Gene3D - 54 348 IPR036457 -
Gma17g00183 480 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 34 390 - -
Gma17g00183 480 Pfam Protein phosphatase 2C 76 323 IPR001932 -
Gma17g00183 480 SUPERFAMILY PP2C-like 46 348 IPR036457 -
Gma17g00183 480 SMART PP2C_4 51 344 IPR001932 -
Gma17g00183 480 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Gma17g00183 480 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 34 390 - -
Gma17g00183 480 ProSiteProfiles PPM-type phosphatase domain profile. 55 346 IPR001932 -
Gma17g00183 480 CDD PP2Cc 71 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00183 Gma-Chr17 1535195 1538226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00183 1 351 PP2C-type Phosphatase Gene Family AT3G06270 70.655 7.26e-174 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00183 - - gmx:100797866 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00183 17 1535195 1538226 Gma17g00183 17 1535195 1538226 ECH
Gma17g00183 17 1535195 1538226 Gma15g00950 15 7936077 7940064 PCT
Gma17g00183 17 1535195 1538226 Gma13g01860 13 33927859 33931592 PCT
Gma15g00950 15 7936077 7940064 Gma17g00183 17 1535195 1538226 PCT
Gma13g01860 13 33927859 33931592 Gma17g00183 17 1535195 1538226 PCT