Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00158 ATGGCACAACAAGTTCAAGTTCAAGTATTCAGTACATGTTATTATTGTCCACCACCTCAATATGTATCCCTTCGCCGAATCGGAATTTTGAACCAATTAAAGTGTGCTACTATTCCTTCACTCTCAGTTTCCGCCTCTTCTGTTCTTCGCAACGCGTCGTTTTGCTGCACCTCTTCTGTCCCATGCAATTTGCCTTCTTCACCCAAAATCTTCGTCAAAGGGCTTCCTCTCTCAACCTCCGAAGGACATTTGATGAAGGTGTTTTCAGAGTTTGGTGAAGTTACTCTAATCCAGCTTCCAATAGATAAAGAATCAGGGCAGTCTTTAGGATTTGCATACATTTGGTTTGTCAAGGAAGAGTCTGCACAATTGGCTGTCCTAGAGATGAATGGAAAGTTTTTTTATGGCAGGTTTATTTATGTTACCATTGCAAAGCCTGGATCATCAAAAAGTTCCAAGAGGGCAACGGCCTACAAATTTTAA 483 0.412 MAQQVQVQVFSTCYYCPPPQYVSLRRIGILNQLKCATIPSLSVSASSVLRNASFCCTSSVPCNLPSSPKIFVKGLPLSTSEGHLMKVFSEFGEVTLIQLPIDKESGQSLGFAYIWFVKEESAQLAVLEMNGKFFYGRFIYVTIAKPGSSKSSKRATAYKF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00158 160 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 49 160 - -
Gma17g00158 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 139 IPR000504 GO:0003723
Gma17g00158 160 Gene3D - 56 157 IPR012677 -
Gma17g00158 160 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 49 160 - -
Gma17g00158 160 SMART rrm1_1 69 142 IPR000504 GO:0003723
Gma17g00158 160 SUPERFAMILY RNA-binding domain, RBD 62 151 IPR035979 GO:0003676
Gma17g00158 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 146 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00158 Gma-Chr17 1336752 1339450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00158 70 146 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 4.43e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00158 - - gmx:100791917 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00158 17 1336752 1339450 Gma17g00158 17 1336752 1339450 ECH