Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00140 ATGGCGAATTTCACCTCTTCCTCCTCCTCCTCTTGTTCTCCCTTACCTCTATCTCTAACTATGTCACACATTTCACCTCCGTCATCTTCTGCGGCTTTCGACGACAGTTCCGAGGACGCCTGCAGCATATGTCTAGAGCCATTCAGCACCCATGACCCTGCCACCATAACCAGTTGCAAACATGAATATCATCTGCACTGTATCCTTGAATGGTTGCAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCCAGCCAAGAGCTTCTAAATGCAGTGGAAGCTGAAAAACGCTTAAGTTCAAGAACTGTATATTCACATGCATTCATGGATTCTCGTAGCCCCCTTCAACGGCTTAACAATGACCAAGATGATTCTTGTTCAGATGATTCTGATTTTGATGAACAACTTATGCAGCACCTAGTTTCTGCTGCAAGTAGAGCTCGCTATATCTGCAGAAGCAAAAGGCAGAGATCCCCCGGAGCAGGTCCTTCAGAGGTTCTTGTTTTTAACTCTTCTATACATGCTTCAGGGATGCAACCAACACTTACAACTTCACCGACTTCTGGTGTACCTTCTGCTGCTCACATTCAATCTCCAACATCCACCTTTTCCTGTGTTGGCATGGTTACAACAAATACTTCTTCCGAGAGTGACATGCCTTCCAAACCCAGAGTCATCTATAGCCAGCCATCACCTGAGAGTGCTAGGAGACTAAACACTTCTGAGATGTTCTCCTTCTCTGAGTCCTTCAAATCCAAACTTTCTGCTGCTTCAGCTAGATGTAAGGAATCAATTTCAAAAAATACTCGTGGTCTTAAGGAGAAGTTGATTGCACGTAATGCTTCGGTGAAAGAGCTGAGTAAAGGTGTTCAGTGTGAGATGAATGCAGGCATAGCTTGCGTTGCAAGAATGATTGAACGCCTTGATCTTACCTCAAAATGGTCCTCATCTGCTCTCATCCCTGTTAAAGGGAAGTCTGTCCAAGAGAATGGAGTTTTGGTTGGCAATGTTACTTCAAATGCTTCCTCACTTGATTCTAGCTTGGTTGCTGTTGGAGTGGAAACTCCTCCTTCATGTGTTCAGAGTGGACATGATGCGGCGAGGACTTAA 1131 0.4474 MANFTSSSSSSCSPLPLSLTMSHISPPSSSAAFDDSSEDACSICLEPFSTHDPATITSCKHEYHLHCILEWLQRSKECPICWQLLILKDPASQELLNAVEAEKRLSSRTVYSHAFMDSRSPLQRLNNDQDDSCSDDSDFDEQLMQHLVSAASRARYICRSKRQRSPGAGPSEVLVFNSSIHASGMQPTLTTSPTSGVPSAAHIQSPTSTFSCVGMVTTNTSSESDMPSKPRVIYSQPSPESARRLNTSEMFSFSESFKSKLSAASARCKESISKNTRGLKEKLIARNASVKELSKGVQCEMNAGIACVARMIERLDLTSKWSSSALIPVKGKSVQENGVLVGNVTSNASSLDSSLVAVGVETPPSCVQSGHDAART 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00140 376 SMART ring_2 41 81 IPR001841 -
Gma17g00140 376 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 335 - -
Gma17g00140 376 MobiDBLite consensus disorder prediction 219 241 - -
Gma17g00140 376 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Gma17g00140 376 Pfam Ring finger domain 40 81 IPR001841 -
Gma17g00140 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 94 IPR013083 -
Gma17g00140 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 335 - -
Gma17g00140 376 SUPERFAMILY RING/U-box 34 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00140 Gma-Chr17 1191571 1195089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00140 35 89 C3H Transcription Factor Family AT4G00335 45.455 5.64e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00140 K19043 - gmx:100775754 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00140 17 1191571 1195089 Gma17g00140 17 1191571 1195089 ECH