Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00139 ATGCTTGAAAGACATTTTTTTTCACTTGAAACTGTGCGGGTGCTGATTGTTGATGAGATTTTGACTTCATATTCATCTTGCCATAACCGTCAGACAGTCTTTGCCAGTGCATCCATACCACAGCACAACCGATTTATTCATGACTTTGTGCAGCAGAAATGGGCAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAATATCTGATACCAAAAGAAAATTACAAACCCTGTTATCCTTGATACAATCTGATGCGCCTGAGTTTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAAGGCTCCATCAACATCCCTTCTGATTGACTTTTTGAAGACATCATACCAAGGTGATTTAGATATTCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTTCTTGTAGCAACAGATATAGCTGCTAGGGAAGTTGACCTTCCAGAAATGCCTCACATTTACAACTTTGATCTACCAAGGACTGCAATAGATTATCTTCATCGAGCAGGGCGAACTTGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATAGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTATGTTTAACTGTGAAGAGCTTATTCCATAAACCTTGA 699 0.3948 MLERHFFSLETVRVLIVDEILTSYSSCHNRQTVFASASIPQHNRFIHDFVQQKWAKRDVVHIHVSAISDTKRKLQTLLSLIQSDAPEFGIIFVAEQSEKSKKAGKAPSTSLLIDFLKTSYQGDLDILLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAAREVDLPEMPHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELCLTVKSLFHKP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00139 232 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 1 230 - -
Gma17g00139 232 SMART helicmild6 110 194 IPR001650 -
Gma17g00139 232 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 73 232 IPR001650 -
Gma17g00139 232 Gene3D - 56 229 IPR027417 -
Gma17g00139 232 Pfam Helicase conserved C-terminal domain 73 192 IPR001650 -
Gma17g00139 232 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 230 - -
Gma17g00139 232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 218 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00139 Gma-Chr17 1188001 1190972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00139 73 219 Eukaryotic Initiation Factors Gene Family AT1G72730 30.201 1.20e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00139 - - gmx:100786205 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00139 17 1188001 1190972 Gma17g00139 17 1188001 1190972 ECH