Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00131 ATGATGCAGGCTGGACCCGGCGGCATGGCCCAACAAGCGAACCAGCAATACGCACAGCAACAGCAACAACAACAACAACAAGCCTACATGATGATGCCGCCGCAGCCTCAGCCCCCTCAGATGTGGGCCCCATCGGCCCAGCCTCCGTCCCAATCGGTAGCTCCTCCGCAACCCACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAAAATTATCTCTATACCTGTTTCGCACACACCGGCGAGCTGGCTTCAGTTAAAGTCATTAGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACTAGTCGAGCTGGTGCCGAGAGAGTCCTTCAAACATACAATGGCACCATTATGCCGAATGGCGGGCAGAACTTCAGATTGAACTGGGCAACTTTTAGTGCAGGTGAGAGGCGTCATGATGACAGCCCGGATCACACCATATTTGTTGGAGACCTGGCTGCAGATGTTACGGATTATCTTCTGCAAGAGACATTTCGGGCACGATATCCTTCAGCTAAGGGGGCCAAAGTTGTAATTGATAGGTTAACTGGACGGACAAAGGGCTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGAGTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGAATTGGACCAGCCTCTAATAAAAACCCTAGCACTCAGTCTCAGCCAAAAGCATCATATCagaatcctcaaggggcacagaacgagcatgatccaaataataccactatttttgttgggaatttggatcctaacgtcacggatgatcatctgagacaagtttttgggcagtatggggagttagttcatgtgaagattccagctggcaagagatgtggatttgtccaatttgcggacaggagctgtgcagaagaggcactgcgggttttgaatggcacacttttaggcggacaaaatgttcggctttcatggggccgaagtccttcaaacaaacagGCTCAACCAGATGCAAACCAGTGGAATGGTAGTGGTGGTGGTGGATACTATGGATATGCGCAGGGGGGCTATGAAAATTACGGTTATGCCCCTGCTGGACAGGATCCCAATATGTATGGCAGTTATCCTGGCTATGCAAATTACCAACCACCCCAGCAACCGCAGCAAATAGGATATAGCTAA 1209 0.3879 MMQAGPGGMAQQANQQYAQQQQQQQQQAYMMMPPQPQPPQMWAPSAQPPSQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGELASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSAKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMSEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGGGYYGYAQGGYENYGYAPAGQDPNMYGSYPGYANYQPPQQPQQIGYS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00131 402 CDD RRM3_NGR1_NAM8_like 264 335 - -
Gma17g00131 402 Gene3D - 149 244 IPR012677 -
Gma17g00131 402 CDD RRM1_SECp43_like 66 146 - -
Gma17g00131 402 SUPERFAMILY RNA-binding domain, RBD 250 365 IPR035979 GO:0003676
Gma17g00131 402 SUPERFAMILY RNA-binding domain, RBD 30 146 IPR035979 GO:0003676
Gma17g00131 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
Gma17g00131 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Gma17g00131 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 330 IPR000504 GO:0003723
Gma17g00131 402 SUPERFAMILY RNA-binding domain, RBD 153 245 IPR035979 GO:0003676
Gma17g00131 402 MobiDBLite consensus disorder prediction 229 266 - -
Gma17g00131 402 CDD RRM2_SECp43_like 157 236 - -
Gma17g00131 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Gma17g00131 402 MobiDBLite consensus disorder prediction 232 266 - -
Gma17g00131 402 SMART rrm1_1 159 233 IPR000504 GO:0003723
Gma17g00131 402 SMART rrm1_1 66 141 IPR000504 GO:0003723
Gma17g00131 402 SMART rrm1_1 266 333 IPR000504 GO:0003723
Gma17g00131 402 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 20 398 - -
Gma17g00131 402 Gene3D - 7 148 IPR012677 -
Gma17g00131 402 MobiDBLite consensus disorder prediction 8 31 - -
Gma17g00131 402 Gene3D - 245 372 IPR012677 -
Gma17g00131 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 337 IPR000504 GO:0003723
Gma17g00131 402 MobiDBLite consensus disorder prediction 1 59 - -
Gma17g00131 402 MobiDBLite consensus disorder prediction 32 55 - -
Gma17g00131 402 MobiDBLite consensus disorder prediction 388 402 - -
Gma17g00131 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Gma17g00131 402 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 20 398 - -
Gma17g00131 402 MobiDBLite consensus disorder prediction 382 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00131 Gma-Chr17 1112489 1116813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00131 67 347 Eukaryotic Initiation Factors Gene Family AT4G34110 25.436 6.10e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00131 - - gmx:100796848 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00131 17 1112489 1116813 Gma15g01006 15 8450117 8454140 PCT
Gma17g00131 17 1112489 1116813 Gma13g01801 13 33345049 33349438 PCT