Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00126 ATGGATATGTTTAAGCAGAATCAGAAGAAGAAAAACACTGGCCGGAAAAAGATTGAGATCAAGAAGCTTGAAAAGGCTAGCAACAAGCAAGTGACGTTCTCAAAAAGAAGAACAGGACTATTCAAAAAAGCCAGTGAACTCTGCATTTTATGCAATGCTTATGTAGCCATAATTGTGTTTTCTCCTGCTGACAAATTGTTCTGCTTTGGCCATCCAGACATCGACTCCATAATTGGTCGCTATCTCAAAGGAGACAACAACGCAGAGTTTGAACCAGCAGCAAAGTCATCAAAAGAAAAATCAGTGTCATATGAGGAGTGTAACAGACAGTACGAAGCGGCCACAAAGAAGTTGGAGTTGGAAAAGAAGAACTTGGCACAAACTGAGATTTTGGCTAAGGGTTGGAACAGAAGGTGGTGGAACGATCCCATTGATCAGATGAGTGAGCAACAGTTGGAGCAGTTTATGATGTCCATTTACGAGTTAAGGAAAAAACTGACAGAAAGAACAGGTGAATTGATGATGCTTGGGACCATGACGTAG 543 0.4125 MDMFKQNQKKKNTGRKKIEIKKLEKASNKQVTFSKRRTGLFKKASELCILCNAYVAIIVFSPADKLFCFGHPDIDSIIGRYLKGDNNAEFEPAAKSSKEKSVSYEECNRQYEAATKKLELEKKNLAQTEILAKGWNRRWWNDPIDQMSEQQLEQFMMSIYELRKKLTERTGELMMLGTMT 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00126 180 SUPERFAMILY SRF-like 14 83 IPR036879 GO:0003677|GO:0046983
Gma17g00126 180 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Gma17g00126 180 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Gma17g00126 180 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Gma17g00126 180 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Gma17g00126 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Gma17g00126 180 Coils Coil 104 131 - -
Gma17g00126 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 176 - -
Gma17g00126 180 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Gma17g00126 180 PANTHER MADS BOX PROTEIN 10 176 - -
Gma17g00126 180 Gene3D - 26 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00126 Gma-Chr17 1091705 1092247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00126 10 167 Type I MADS-box Gene Family AT5G60440 41.667 6.03e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma17g00126 SRF-TF 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00126 - - gmx:100814979 342.428