Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00099 ATGGCCACGTCAACCTCACTCCTCTTGCTTTCATGCTTCATGCTACACCTTGCTTCAACCTTCGTTATTGTCCATTCAACAGATAACAAGTACTACAACACTTTACCTACCTCAAAGTATATGATCCCGGAGAGTCCTAAGAAAGCATTGCTCAATGTGATAGACTCTTGTTGGCGTACAAAGCCAAATTGGGCTTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCACAGGTGGCAAGTATGGTGCAATATACCGAGTCAAAGATCCCTCTGATGACCCTGTAAACCCAAAACCAGGCACACTCCGTTATGGTGCAATCCAAACAGAGCCCCTCTGGATCATTTTTGACAAAGACATGGTTATTAGGCTAAAAAATGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGGGCTAAAGTGGAAATTACTGATGGGCCTTGCATTACAATACAAGGTGTTAGTCATGTCATTATACATGGCATTAACATCCATGATTGTAAACCAGCCAAACCTGGCCTTGTGAGGAGTACTCCTGACCATGTTGGTCATCGTCTAGGCTCTGATGGAGATGCCATTAGCATATTTGATTCCTCCAATATTTGGATTGATCATTGCTTTTTGGCTCGTTCCACTGATGGCCTAATCGATGTTATTCATGCATCAACCGCCATTGCGATCTCTAACAATTACTTTACCCAGCATGACAAAGTTATGTTGCTAGGACATAATGACCAATACACAGCGGATAAAATAATGAGAGTAACAATAGCATTCAACCGTTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACAAATATGATGAGTGGAAGATGTATGCTATAGGCGGCAGTGCTAACCCAACCATTTTAAGTGAAGGCAATCTTTATGTAGCACCAAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGGGAAGGAAAACTGGAAGAGTTGGAAATGGAGGTCTTCCAAGGATTTATTCCTAAATGGTGCTTATTTTGTACCATCTGGGTTTGGAAGCTGTGCCCCAAATTATTCACCTACTCAATCTTTTTCTGCTGCTCCAGCGTACTTGGTGCCTGCAATGACTCTCAATGCTGGCCCCACAAATTGTGTTGTTGGGAGAGCATGTTAG 1197 0.4294 MATSTSLLLLSCFMLHLASTFVIVHSTDNKYYNTLPTSKYMIPESPKKALLNVIDSCWRTKPNWASNRQALADCAIGFGKDATGGKYGAIYRVKDPSDDPVNPKPGTLRYGAIQTEPLWIIFDKDMVIRLKNELIMNSYKTIDGRGAKVEITDGPCITIQGVSHVIIHGINIHDCKPAKPGLVRSTPDHVGHRLGSDGDAISIFDSSNIWIDHCFLARSTDGLIDVIHASTAIAISNNYFTQHDKVMLLGHNDQYTADKIMRVTIAFNRFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNLYVAPNDPNAKQVTKREGKENWKSWKWRSSKDLFLNGAYFVPSGFGSCAPNYSPTQSFSAAPAYLVPAMTLNAGPTNCVVGRAC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00099 398 SUPERFAMILY Pectin lyase-like 52 389 IPR011050 -
Gma17g00099 398 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Gma17g00099 398 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Gma17g00099 398 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Gma17g00099 398 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Gma17g00099 398 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Gma17g00099 398 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Gma17g00099 398 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Gma17g00099 398 PRINTS Pollen allergen Amb family signature 369 392 IPR018082 -
Gma17g00099 398 Gene3D - 51 391 IPR012334 -
Gma17g00099 398 Pfam Pectate lyase 132 316 IPR002022 -
Gma17g00099 398 PANTHER PECTATE LYASE 18-RELATED 1 397 IPR045032 GO:0030570
Gma17g00099 398 SMART amb_all 125 322 IPR002022 -
Gma17g00099 398 PANTHER PECTATE LYASE 1 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00099 Gma-Chr17 901158 903187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00099 37 398 Polysaccharide Lyase AT1G11920 69.697 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00099 K01728 - gmx:100807483 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00099 17 901158 903187 Gma15g01038 15 8749405 8750864 PCT
Gma17g00099 17 901158 903187 Gma09g00060 09 471547 473193 PCT