Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00091 ATGGAGATCCCCAACAACAACTATGGAGGCTCCTCTTCTTCCGCTATCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCCTGGCAGCCTACGTCAATTGCCAAAAGGTTGGGGCTCCGCCTGAAGTGATGGGAAGGTTAGAAGAAGCATGTGCATCTGCTGCAGTGACAATGGCAGGTGGAACAGCTAGCATAGGCGAGGATCCAGAGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCCATGCTCTTTCTTCAAAGGATAGAGTGCCAGTTCAAATCTCTCACTATTTCTTCTTCGTTGGACACTACTGCTTGTAATGAAGCTATTGATAGGAATGGATCATCTGATGATGTTGATGTTCAGACCAACATAATAGATCCACAGGCAGAGGACCAAGAATTGAAAGGTCAACTCTTACGCAAGTACCGTGGATACCTAGGCAGTTTGAAGCAGGAATTCACCAAGAAGAGGAAAAAGGGCAAGCTGCCCAAAGAAGCAAGACAACAATTACTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTAGCTCTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATCAATCAAAGAAAGCGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTTGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCCATGAATCTCTCCCACACAATGCTCTAA 810 0.4667 MEIPNNNYGGSSSSAIKAKIMAHPHYHRLLAAYVNCQKVGAPPEVMGRLEEACASAAVTMAGGTASIGEDPELDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSLDTTACNEAIDRNGSSDDVDVQTNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPMNLSHTML 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00091 269 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 16 258 - -
Gma17g00091 269 SMART KNOX1_2 14 58 IPR005540 GO:0003677|GO:0005634
Gma17g00091 269 Pfam KNOX2 domain 66 113 IPR005541 GO:0003677|GO:0005634
Gma17g00091 269 SMART HOX_1 173 238 IPR001356 GO:0003677
Gma17g00091 269 Gene3D - 176 238 - -
Gma17g00091 269 SUPERFAMILY Homeodomain-like 173 249 IPR009057 -
Gma17g00091 269 PANTHER - 16 258 - -
Gma17g00091 269 Pfam ELK domain 151 171 IPR005539 GO:0003677
Gma17g00091 269 SMART ELK_2 151 172 IPR005539 GO:0003677
Gma17g00091 269 ProSiteProfiles 'Homeobox' domain profile. 171 234 IPR001356 GO:0003677
Gma17g00091 269 CDD homeodomain 183 235 IPR001356 GO:0003677
Gma17g00091 269 Pfam KNOX1 domain 15 54 IPR005540 GO:0003677|GO:0005634
Gma17g00091 269 Pfam Homeobox KN domain 191 230 IPR008422 GO:0003677|GO:0006355
Gma17g00091 269 ProSiteProfiles ELK domain profile. 151 171 IPR005539 GO:0003677
Gma17g00091 269 SMART KNOX2_2 63 114 IPR005541 GO:0003677|GO:0005634
Gma17g00091 269 ProSitePatterns 'Homeobox' domain signature. 209 232 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00091 Gma-Chr17 832289 837097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00091 16 269 Homeobox Transcription Factor Family AT1G62360 79.389 3.19e-132 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma17g00091 KNOX2 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00091 - - gmx:100127401 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00091 17 832289 837097 Gma15g01052 15 8848438 8855451 PCT
Gma17g00091 17 832289 837097 Gma09g00073 09 550513 557425 PCT