Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00088 ATGAGTCAACTCGGTCTCATATTGCAGGAATCGCTCCGCACCGAGAGAGAAGCAAGAACCATTCTGGGTTTGTTAACGGAGCAAATGGACAGCGTCGGTAGAGGCCAACGGAGGAGACGGACCCTCAAAGAACGCCTCAGATTCACCGGAATCGGCTGTTGTGGAGCCACGTGGGTTTTCCGTCCAATTGTCAGGGACGAAGGAGGAGGGGCACAAGCACAACAACAGCCGCAGGAAACAAATGCGGGTCAAGATCCGAATCATACTGGGCCCGAACATGTGGGTCCGAGTCAGTCGAGTTCGGGAATGAATCTTGCGGCGGCGCTGGCGGCGGAGCGTCAGTTCCGTGAGGGTGAGGGGACGCCTTTGAGGGTGTCGTTGATGCGGCTGTTGGAGGAAACAGAGGGTGGGGATGCGGCGGTGGAAGCAGTGGGGAATGATTGGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCATTCATCCCGTGTGGGCACACATTCTGTAGGGTGTGTTCGAGGGAGCTGTGGTTGAACAGAGGTACTTGTCCCCTTTGCAACCGTTCCATACTCGAGATTCTCGACATCTTCTGA 597 0.5645 MSQLGLILQESLRTEREARTILGLLTEQMDSVGRGQRRRRTLKERLRFTGIGCCGATWVFRPIVRDEGGGAQAQQQPQETNAGQDPNHTGPEHVGPSQSSSGMNLAAALAAERQFREGEGTPLRVSLMRLLEETEGGDAAVEAVGNDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGTCPLCNRSILEILDIF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00088 198 PANTHER OS01G0917900 PROTEIN 17 198 - -
Gma17g00088 198 CDD RING-HC 150 187 - -
Gma17g00088 198 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
Gma17g00088 198 SUPERFAMILY RING/U-box 145 195 - -
Gma17g00088 198 SMART ring_2 150 187 IPR001841 -
Gma17g00088 198 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 198 - -
Gma17g00088 198 MobiDBLite consensus disorder prediction 71 103 - -
Gma17g00088 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 197 IPR013083 -
Gma17g00088 198 MobiDBLite consensus disorder prediction 68 103 - -
Gma17g00088 198 Pfam Zinc finger, C3HC4 type (RING finger) 149 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00088 Gma-Chr17 799449 800399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00088 21 198 C3H Transcription Factor Family AT4G22250 52.427 4.03e-56 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00088 - - gmx:100792613 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00088 17 799449 800399 Gma15g01060 15 8943702 8944646 PCT
Gma17g00088 17 799449 800399 Gma09g00081 09 644312 645652 PCT