Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00086 ATGACTCGCCCATTAGGGGTTTCAGACACGCCGAGGGAGTTCTCATTCTCATTCTCATTGAACTCACTAACTAAACTAAGCTACCATTTTTCTTTATTTAATCACACACGCTATCTTCTTCTGGACTCTTCCACTGGTACTTGCTGTCCAATTTTTCATTTCGTGCGGCTTCTCACTGGGAGGACAATAATATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTTCGAACTCAAACCAAGGTGGTGCGGTTGATAATTCGGGTTCAGAAGGCGAATGAGCTGAAAGAAGAAGGGAATAAGAGGTTTCAGAACAAGGACTATGCGGGTGCTCTTGAACAGTACGAGAGTGCTCTTCGTTTAATCCCCAAAACGCACCCTGACAGAGCCGTTTTCCACAGCAACAGGGCCGCGTGTTTGATGCAGATGAAGCCCATTGATTATGAAGCTGTCATTGTGGAGTGCACCATGGCGCTTCAGGTCCAGCCACGCTTTGTCCGGGCACTTCTCCGCCGGGCTCGGGCGTTCGAGGCCGTTGGAAAGTATGAAATGGCTGTGCAAGATGTGCAGTTCTTGCTGGCAGCTGATCCTGGTAACCGCGATGCCTTGGAGATTGCCCAGAGATTGAGGACTGCATTGGGGCCACGCCAAGAGGCCCAGCAGGACCTCCACAGTCGCCCCTCCCCGGCTGCACTTGGCGCTTCGGCTGTCCGTGGTGCCCCTATTGCTGGATTAGGGCCTTGTTTGCCAGCTCGGCCTGTGGGAAAGAAGGGAGCAAATTCGGTGGTTGGATCTGTTGTGTTGCCTAATAATAACAAGCCAGACAAGTCACAGCCAGTTTTGCCAACCGAGAATGGTCCTGACACCAAGTCCCAGTTGCCAAAACTGGTATTGAAGCCTTCAAATGGTTCTGTGAAGCCACCTAACCGTAAAAAGGAAGATCACAAGGAACTGTCATCGACCATTCATGGGCAGCGTTTGGAGGTTGCAGTTCGGTGGAGACCATTGAAACTTGTTTATGATCATGACATTAGGCTTGCCCAGATGCCGGTCAATTGCCATTTTAGAGTACTAAGGGATGTAGTAAGCAAAAGATTTCCTTCGTCAAGTTCTGTTCTGATCAAGTATAAGGATTGTGATGGTGATTTGGTTACTATAACCTCTACTGATGAACTCAGATTGGCAGAGTCTAGTGTTGATAGCCATCTCATGAAAGAACCCGGGGAAGATAAAAGTGATTCTGTAGCAATGCTGAGACTGCATATTGTTGAAGTTAGTCCAGAGCAGGAGCCTCCTTTGTTGGAAGAAGAGGAAGAAAAACCAGTTGAGAATGAAGGGGTCATGGGAGAAGAGAGTGGATCTCATTCTTCTCTCAGTGAATCTGTCTCTGAAGTTGCTGATACCGAGGTTGATAAGACTGCGAAGGATACTCCAAAGGAAAAGCCAGGAACCACAGGAGATACTGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAACTTTTCCGCTCTCATGTTGGTATTGATCCAGATGCCCATCTTGACTTGCATGAGCTTGGGATGGAACTTTGTTCTGAGGCACTTGAGGAAACAGTTACTAGTGAGGAGGCTCAGGATCTATTTGACAAGGCAGCTTCAAAATTTCAGGAGGTGGCTGCTTTGGCTTTCTTCAACTGGGGTAATGTTCACATGTGTGCAGCTAGGAAGCGGATTCCCCTGGATGAGTCAGCTGGGAAGGAGGTAGTGGCAGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCTTTAGCAAGAGAGAAGTATGAGGAAGCACTCTCGATCAAACCAGACTTTTATGAGGGATTGTTGGCTCTGGGGCAGCAACAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATAGATCTATCAGGCTGGGATTCTAAGGAGACACTTCAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAAAAACTGGAGGAACAGAGGGCAAAAGAGCTAAAGGACCCAAATGCAACCAAGAAAGAAGAATTATTGAGAAGAAGAAAGAAACAAGGTGCTACTGAAGGTGAGTCCTCAAGTGTTGGAGGTCAGGGTGAAATATCTGCAGAAGAAGCTGCCGAGCAAGCAGCTGTCATGAGATCACAAATTCACCTCTTCTGGGGTAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTGGGAATGACTGGATGGAAGGAAAACCTGGATGCTGCAACTGAACGCTTTAAGCTTGCAGGAGCTTCTGAGGCTGATGTTTCGATGGTTCTGAAGAATCATTGCTCAAATGGAGATGCAAAAGATGGAGATGATAAAAAGGTTGAGAACCCACAGCACAATAAGACTGTTAAACCAGAGATCAACAATGCTAATCAAGTATGA 2457 0.4652 MTRPLGVSDTPREFSFSFSLNSLTKLSYHFSLFNHTRYLLLDSSTGTCCPIFHFVRLLTGRTIIWGNQGVEERRVVRTQTKVVRLIIRVQKANELKEEGNKRFQNKDYAGALEQYESALRLIPKTHPDRAVFHSNRAACLMQMKPIDYEAVIVECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQFLLAADPGNRDALEIAQRLRTALGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVGKKGANSVVGSVVLPNNNKPDKSQPVLPTENGPDTKSQLPKLVLKPSNGSVKPPNRKKEDHKELSSTIHGQRLEVAVRWRPLKLVYDHDIRLAQMPVNCHFRVLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDSHLMKEPGEDKSDSVAMLRLHIVEVSPEQEPPLLEEEEEKPVENEGVMGEESGSHSSLSESVSEVADTEVDKTAKDTPKEKPGTTGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHLDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYEWVKEKYSLAREKYEEALSIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKQGATEGESSSVGGQGEISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMTGWKENLDAATERFKLAGASEADVSMVLKNHCSNGDAKDGDDKKVENPQHNKTVKPEINNANQV 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00086 818 MobiDBLite consensus disorder prediction 306 320 - -
Gma17g00086 818 MobiDBLite consensus disorder prediction 426 489 - -
Gma17g00086 818 SMART tpr_5 166 199 IPR019734 GO:0005515
Gma17g00086 818 SMART tpr_5 130 165 IPR019734 GO:0005515
Gma17g00086 818 SMART tpr_5 585 618 IPR019734 GO:0005515
Gma17g00086 818 SMART tpr_5 92 125 IPR019734 GO:0005515
Gma17g00086 818 SMART PB1_new 333 425 IPR000270 GO:0005515
Gma17g00086 818 MobiDBLite consensus disorder prediction 787 818 - -
Gma17g00086 818 MobiDBLite consensus disorder prediction 265 320 - -
Gma17g00086 818 Gene3D - 335 405 - -
Gma17g00086 818 MobiDBLite consensus disorder prediction 450 464 - -
Gma17g00086 818 PANTHER PROTEIN CLMP1 84 808 IPR044517 -
Gma17g00086 818 PANTHER - 84 808 - -
Gma17g00086 818 MobiDBLite consensus disorder prediction 788 805 - -
Gma17g00086 818 ProSiteProfiles TPR repeat profile. 92 125 IPR019734 GO:0005515
Gma17g00086 818 Gene3D Tetratricopeptide repeat domain 86 213 IPR011990 GO:0005515
Gma17g00086 818 MobiDBLite consensus disorder prediction 679 705 - -
Gma17g00086 818 MobiDBLite consensus disorder prediction 265 298 - -
Gma17g00086 818 Pfam PB1 domain 333 424 IPR000270 GO:0005515
Gma17g00086 818 ProSiteProfiles PB1 domain profile. 333 425 IPR000270 GO:0005515
Gma17g00086 818 MobiDBLite consensus disorder prediction 679 719 - -
Gma17g00086 818 MobiDBLite consensus disorder prediction 430 444 - -
Gma17g00086 818 SUPERFAMILY TPR-like 91 223 IPR011990 GO:0005515
Gma17g00086 818 Coils Coil 659 679 - -
Gma17g00086 818 MobiDBLite consensus disorder prediction 465 489 - -
Gma17g00086 818 SUPERFAMILY CAD & PB1 domains 331 399 - -
Gma17g00086 818 CDD PB1 336 405 - -
Gma17g00086 818 SUPERFAMILY TPR-like 510 635 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00086 Gma-Chr17 779713 782757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00086 88 213 Calmodulin-binding Proteins AT3G25230 29.197 6.78e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00086 - - gmx:100786963 1370.53