Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00083 ATGGGAGGCTCATGTTTCCATGCGCTTCGTTTGAGGAGGTTCAAGAGTAAGGCTCTGCCAGAACCTTCTTCATCTTCCAAGACAAGGTTGGATTCTGACTTGGAGAACATGGAGAGAAGAAGGTTTGATAGCTTGGAATCATGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAAGCTTCAAAGGAGGATCAAGAAGAATGGACTGCTGATCTTTCTCAACTTTTCATAGGTAACAAGTTTGCTTCTGGTGCTCACAGTAGGATTTACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTCAAAATGGTGAGAATTCCCACGCAGGACGAGGAGAGGAGAGGCTTGCTCGAACAGCAATTCAAGTCTGAAGTGGCTTTACTTTCACGTCTCTTTCATCCCAACATAGTGCAGTTTATTGCAGCATGTAAGAAACCGCCGGTGTACTGTATCATAACAGAATACATGTCACAAGGAACACTGAGGATGTATCTGAACAAGAAAGAGCCATACTCTCTTTCAACAGAAACTATATTAAGGTTAGCTCTTGACATATCTAGGGGTATGGAGTACCTTCACTCGCAAGGTGTGATTCACAGAGATTTGAAGTCAAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTGGCAGATTTTGGAACATCGTGTCTTGAAACGCGGTGTCGGGAGACCAAGGGAAACATGGGAACATATCGTTGGATGGCACCGGAGATGATTAAGGAGAAATCTTACACTCGTAAAGTTGATGTTTACAGTTTTGGAATTGTGCTTTGGGAACTCACTACCGCTCTTCTTCCCTTCCAAGGAATGACCCCTGTGCAGGCTGCTTTTGCTGTTGCTGAGAAGAATGAAAGGCCTCCACTACCTGCTAGTTGCCAGCCAGCACTTGCCCATCTGATAAAACGTTGTTGGTCAGCAAACCCTTCAAAGAGGCCAGATTTCAGTGACATTGTGTGTACTCTGGAGAAGTACGATGAGTGTGTGAAGGAGGGTCTACCTCTGACCCATCATTCAGGCCTAGTCAGCAAAAACGTCATTATCGAACGCTTAAAAGGTTGCGTCCCTATGAGCTCTTCCATACCTGTACAAGCTTGA 1125 0.4507 MGGSCFHALRLRRFKSKALPEPSSSSKTRLDSDLENMERRRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRGLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKSYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSGLVSKNVIIERLKGCVPMSSSIPVQA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00083 374 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 362 - -
Gma17g00083 374 Gene3D Phosphorylase Kinase; domain 1 66 159 - -
Gma17g00083 374 Gene3D Transferase(Phosphotransferase) domain 1 160 349 - -
Gma17g00083 374 ProSiteProfiles Protein kinase domain profile. 77 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00083 374 CDD STKc_MAP3K-like 84 328 - -
Gma17g00083 374 Pfam Protein tyrosine and serine/threonine kinase 79 330 IPR001245 GO:0004672|GO:0006468
Gma17g00083 374 PRINTS Tyrosine kinase catalytic domain signature 155 168 IPR001245 GO:0004672|GO:0006468
Gma17g00083 374 PRINTS Tyrosine kinase catalytic domain signature 193 211 IPR001245 GO:0004672|GO:0006468
Gma17g00083 374 PRINTS Tyrosine kinase catalytic domain signature 239 249 IPR001245 GO:0004672|GO:0006468
Gma17g00083 374 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672|GO:0006468
Gma17g00083 374 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672|GO:0006468
Gma17g00083 374 SMART serkin_6 77 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma17g00083 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Gma17g00083 374 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 10 362 - -
Gma17g00083 374 SUPERFAMILY Protein kinase-like (PK-like) 55 331 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00083 Gma-Chr17 758993 762437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00083 1 364 MAP Kinase Kinase Kinase AT1G62400 83.957 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma17g00083 PK_Tyr_Ser-Thr 1.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00083 - - gmx:100803225 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00083 17 758993 762437 Gma15g01068 15 9029319 9034290 PCT
Gma17g00083 17 758993 762437 Gma09g00089 09 729858 735364 PCT