Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00075 ATGTCTGTCATCGAAACCCCCGCCGTCCACCACCGCAGCGGGGGCTCAACCGATCACCGTCACCCTTCCAAGCGCAAATTTGACGATGAAGACGACGAGGATTTCTCGGACTTAGTCTGCGTGAGGATGCGGAAAGACGAGGCCAAGGCGGTGAATTCCTGGTCCGCCTCCTCCTCCGACGCCGGCGGCTGCTCCGCCTTGCAGCGCCAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTGCGGCGGAAACACGATTGTGATGCAAGCCTTCCCCGAAGACAGCGTGAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCATTGTTCGAGCAGAGGCTTATTTATCGCGGTAAGCAGCTCCAGTGGGAACAGACTCTGGCCGAGTGTTCCATTCAAAACGACGCCAACCTTCAATTAGTTGGTCGTATGCGCAGCACCGAACACCCTCAAGCCTGGCAAGTTATCAACGACATGGTTTCTCTCGTTTACCGTCTTTGCTGCGGCGAAACTGTTCACGATTCCTTGAAGACTATCAAGGGTTTGATCACCAGTTACTTGAACATGACGCCCAGAATTGACAACGACTCTGCCTCTGGTTACTTTCAGATTTTCATGTCTTCTTCTGCCCCTGCCGTGCTTGTTATGCTCTACGTGTCCCCTTACGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGGCACTTTTTGAGTTCTTGTCGCACTACTTTGTCTAAGGCATTGCACGGGCAGTGTGCGCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGCTGTCAAGACCCTTTGTATCTCTATTGTCGGAGTGCTTTTGGGTCCTTGTTGGAAACTGCTGGAGTTTCCTATGCTGCTTCTGCTTCTGGCAATGTTAAGGGGCTGGTTTCGATTCAGGATATTTTCCCCTTTGTTCGTGATCTTGCCAGTAGCTTGTTGAGGGATTTGGACTTGAGTATGGTATCCCCCACGGCCGTGGGGCCTTTGTCAAACGATGTTGGGGATTTTTCTGCATTCTTAATGCCTTTGAGGACTGGAATTAAGGAGCAACAAGCTGTCAAGAATGCTATGCCTCAAGACAAACGCCATAAGGATCTCTTGCTCGCGGAAGAGATTGAACATCTTCATGGTTTGTACATTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGGACCAAAATTTGACTGGCCGGGAAATGATGGAAGGGGATAATCTTTATCCTGCTTGGTCTCATTATCTTTCCATCTTGAAGGAATTGTATCAAATTTCCAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGCATTTTGACACGGCAAAGAAGTGTGCTGTGTCTGCTGATTGTTCGATATGCGAAGAGAACTGATGAGCATCAGTGGATTCTTGAGCATAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCGGAGGTGAAAGAGGACTATGAAGAGTTACACGAGATGCTTATTGACAGGTCTCAGTTATTGACCGAGTCATTTGAATACATAGCACGTGCTGAGCCCGAATCTCTGCATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTATTAAGGGAGTGGTTTCTTCTGGTATGTCAAGCAATATTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGATCAAAGGAGATTTTTCCCTAATCCCGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTATAGAAGATATAAGGGATGCAGATCCTTATCTGTATACAAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTGGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAATATTCTTTCAAACTCAAAGTTCCAGCAGTACTTCTTCCAAAGTTTAGACCTCGAAGATCTTGA 2151 0.464 MSVIETPAVHHRSGGSTDHRHPSKRKFDDEDDEDFSDLVCVRMRKDEAKAVNSWSASSSDAGGCSALQRQQRSHIQFFVRMMCGGNTIVMQAFPEDSVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRTTLSKALHGQCARVVLEFCKLLRRVGCQDPLYLYCRSAFGSLLETAGVSYAASASGNVKGLVSIQDIFPFVRDLASSLLRDLDLSMVSPTAVGPLSNDVGDFSAFLMPLRTGIKEQQAVKNAMPQDKRHKDLLLAEEIEHLHGLYIQLLNKIDQCLQKMDQNLTGREMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWSILTRQRSVLCLLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDQRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIAIEDIRDADPYLYTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYSFKLKVPAVLLPKFRPRRS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00075 716 PRINTS Ubiquitin signature 86 106 IPR019956 -
Gma17g00075 716 PRINTS Ubiquitin signature 107 127 IPR019956 -
Gma17g00075 716 PRINTS Ubiquitin signature 128 149 IPR019956 -
Gma17g00075 716 MobiDBLite consensus disorder prediction 12 33 - -
Gma17g00075 716 SMART ubq_7 75 147 IPR000626 GO:0005515
Gma17g00075 716 SUPERFAMILY Ubiquitin-like 75 163 IPR029071 -
Gma17g00075 716 Gene3D Hect, E3 ligase catalytic domains 465 655 - -
Gma17g00075 716 Gene3D - 67 164 - -
Gma17g00075 716 MobiDBLite consensus disorder prediction 1 33 - -
Gma17g00075 716 SMART hect_3 525 716 IPR000569 GO:0004842
Gma17g00075 716 Pfam Ubiquitin family 78 149 IPR000626 GO:0005515
Gma17g00075 716 Pfam HECT-domain (ubiquitin-transferase) 556 698 IPR000569 GO:0004842
Gma17g00075 716 ProSiteProfiles HECT domain profile. 527 697 IPR000569 GO:0004842
Gma17g00075 716 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 57 697 - -
Gma17g00075 716 ProSiteProfiles Ubiquitin domain profile. 75 151 IPR000626 GO:0005515
Gma17g00075 716 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 57 697 - -
Gma17g00075 716 SUPERFAMILY Hect, E3 ligase catalytic domain 502 697 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00075 Gma-Chr17 699071 706063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00075 75 149 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.000 1.65e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00075 - - gmx:100796470 1376.69