Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00070 ATGGTTTCCGCGGAGAAAGATTCCAATGAAACTCATCGAACCATCATCGGGAAGTCCATGCGAACGGTGCGCTCCAAAATATTCCAACACGACCACGCCACGTGCGTCTCCGACAACTTAACCGGTTCGCTAATGGAACTCGCATCGCGAAACAACAAATCCGTTAAGTCTTCAATTACGGAGGAGCAACTCCTCGAGCTCTCTCAAGCTCTGAGCGATTTCTCCGCCTGTAGCAGCGATATCTCCGGGGAGCTCCAGAGACTCGCCACCGTCTCCTCCTCCCAACCTCCTGCTGCTGCTGCTGACATCCACGGCCAACCCCAACCTGAGCCCGAGCCGTGCCTAGGGTTTCTCCAGAGGGAGAGCTTCTCCACTGAGATCATCGAGAGTATCTCGCCGGAGGATCTTCAGCCGACGGTCAAGATCTGCGTCGACGGACTTCTCTCGCCGTCGTTGGCCGTGAAGCGATCGGCGGCGGCCAAGCTGAGGCTGTTGGCGAAGAACCGAGCCGACAACCGCGCTCTCATCGGCGAGTCCGGTGCGGTGGCTGCTCTGGTTCCGCTGCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCGGTGACGGCGTTGCTGAACCTGTCTCTTCTGGAAGAGAACAAGGCGCTTATAACGAATGCGGGTGCGGTGAAGTCGCTGATATACGTGCTGAAAAGAGGGACGGAGACTTCCaagcagaacgcggcgtgcgcgctcatgagtctggcgctggtggaagagaacaagaggtcgatcgggacttgcggggcgataccaccgctggtggcgctgctgttgggtgggtcccagagagggaagaaggacgcgctgacgacgctgtacaagctgtgttcagtgaggcagaacaaggagagggcggtgagtgccggggcggtgaggccgctggtggagctggtggcggagcaggggagcgggatggcggagaaggcgatggtggtgctgaacagcttggcggggattgaggaggggaaggaggccattgtggaagaaggtgggattgctgcgcttgtggaagcgattgaggttggGTCGGTGAAGGGGAAGGAGTTCGCTGTTTTGACTCTTTATCAACTCTGTGCTGAAACCGTTACCAACAGAGCCCTTCTCGTCAGGGAGGGAGGGATTCCGCCTCTCGTTGCTCTTTCTCAGAGCTCCCCTGTTCGAGCTAAGCTCAAGGCTGAGACACTCCTTGGATATTTGAGAGAATCAAGACATGAAGCTTCATGTTCAAGTCCGCCCGTGAAGCTGCTTCTCTTTGTTGTAAAGCGACTCGCCGCTCTCAAGCTTTCATTTGCGGTAACAAGTTGCATCAGTGTGCCCCACAGCCACCATGCAGGTCAACCCCACCACACAACAGAATACATCTCTTTGGTTGAGGATTGCACCAAAGGTGAAGAGCTGTTGGGTGAGAGACACTGCTTTCTCTCACGCAGAAGTGTGAGTTGCTGA 1488 0.4207 MVSAEKDSNETHRTIIGKSMRTVRSKIFQHDHATCVSDNLTGSLMELASRNNKSVKSSITEEQLLELSQALSDFSACSSDISGELQRLATVSSSQPPAAAADIHGQPQPEPEPCLGFLQRESFSTEIIESISPEDLQPTVKICVDGLLSPSLAVKRSAAAKLRLLAKNRADNRALIGESGAVAALVPLLRCSDPWTQEHAVTALLNLSLLEENKALITNAGAVKSLIYVLKRGTETSKQNAACALMSLALVEENKRSIGTCGAIPPLVALLLGGSQRGKKDALTTLYKLCSVRQNKERAVSAGAVRPLVELVAEQGSGMAEKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEVGSVKGKEFAVLTLYQLCAETVTNRALLVREGGIPPLVALSQSSPVRAKLKAETLLGYLRESRHEASCSSPPVKLLLFVVKRLAALKLSFAVTSCISVPHSHHAGQPHHTTEYISLVEDCTKGEELLGERHCFLSRRSVSC 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00070 495 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 15 421 - -
Gma17g00070 495 Gene3D - 281 425 IPR011989 -
Gma17g00070 495 PANTHER U BOX DOMAIN-CONTAINING 15 421 - -
Gma17g00070 495 SMART arm_5 333 373 IPR000225 GO:0005515
Gma17g00070 495 SMART arm_5 169 209 IPR000225 GO:0005515
Gma17g00070 495 SMART arm_5 210 250 IPR000225 GO:0005515
Gma17g00070 495 SMART arm_5 251 291 IPR000225 GO:0005515
Gma17g00070 495 SMART arm_5 375 415 IPR000225 GO:0005515
Gma17g00070 495 SMART arm_5 292 332 IPR000225 GO:0005515
Gma17g00070 495 SUPERFAMILY ARM repeat 137 414 IPR016024 -
Gma17g00070 495 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 180 222 IPR000225 GO:0005515
Gma17g00070 495 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 303 345 IPR000225 GO:0005515
Gma17g00070 495 Gene3D - 125 280 IPR011989 -
Gma17g00070 495 Pfam Armadillo/beta-catenin-like repeat 253 291 IPR000225 GO:0005515
Gma17g00070 495 Pfam Armadillo/beta-catenin-like repeat 171 208 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00070 Gma-Chr17 664257 667061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00070 78 418 U-box Gene Family AT2G23140 45.455 2.78e-79 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00070 - - gmx:100801642 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00070 17 664257 667061 Gma15g01091 15 9204050 9206709 PCT
Gma17g00070 17 664257 667061 Gma09g00109 09 889386 892115 PCT