Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00050 ATGGAAACTGGAGGCTTTCACGGCTACCGCAAGCTCCCCAACACCACCGCTGGGTTGAAGCTGTCAGTGTCAGACATGAACATGAGGCAGCAGGTAGCATCATCAGATCACAGTGCAGCCACAGGAGAGGAGAACGAATGCACGGTGAGGGAGCAAGACAGGTTCATGCCAATCGCCAACGTGATTAGGATCATGCGCAAGATTCTCCCTCCACACGCAAAAATCTCGGACGATGCAAAAGAAACAATCCAAGAGTGCGTGTCTGAGTACATCAGCTTCATCACAGGTGAGGCGAACGAGCGTTGCCAGAGGGAGCAGCGGAAGACCATAACCGCAGAGGACGTGCTTTGGGCCATGAGCAAGCTTGGATTCGACGACTACATCGAACCGTTGACCATGTACCTTCACCGCTACCGTGAACTTGAGGGTGACCGCACCTCTATGAGGGGTGAACCACTCGGGAAGAGGACTGTGGAATACGCCACGCTTGGTGTTGCTACTGCTTTTGTGCCTCCACCCTATCATCACCACAATGGGTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAGCGCCACCAAATACAGCCTCCTCCCATcaccaccaccaccaccaccaccaccaTGCTCGTGGAATCTCCAATGCTCATGAACCAAATGCTCGCTCCATATAA 681 0.5125 METGGFHGYRKLPNTTAGLKLSVSDMNMRQQVASSDHSAATGEENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVEYATLGVATAFVPPPYHHHNGYFGAAMPMGTYVREAPPNTASSHHHHHHHHHHARGISNAHEPNARSI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00050 226 ProSitePatterns NF-YB/HAP3 subunit signature. 86 102 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gma17g00050 226 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gma17g00050 226 Gene3D Histone, subunit A 42 160 IPR009072 GO:0046982
Gma17g00050 226 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 3 164 - -
Gma17g00050 226 MobiDBLite consensus disorder prediction 194 226 - -
Gma17g00050 226 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 55 119 IPR003958 -
Gma17g00050 226 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Gma17g00050 226 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Gma17g00050 226 PRINTS CCAAT-binding transcription factor subunit A signature 121 139 - -
Gma17g00050 226 SUPERFAMILY Histone-fold 52 151 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00050 Gma-Chr17 529793 531844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00050 1 180 CCAAT-HAP3 Transcription Factor Family AT5G47670 63.184 5.02e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma17g00050 CBFD_NFYB_HMF 6.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00050 K08065 - gmx:100800011 449.514