Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma17g00043 | ATGAAACGCTCAAACGACGACGTCGCTGCCCCCGTCCCCGCCTCAACCTCCAAGCCAGTGTTCCTAACCAAAGCCCAACGCGAGCAATTGGCTCTCCAGCGCCGCCAGGAAGAAGTCGCCGACCAGAAGCGCCGCCAGGAGCAGCTCCTCTCCCGCAACCACTCCTCCGATCCCAAACCCTCCTCCGACCGCGACAGAGACAGAGAAAGAGACCGAGACCACCACCGAGACCGGGACCGCGATCGTGACAGAGACAGAGAACGCGAGCGCGAGAGGGCCCGCGATCGGGATCGCGAAGCCGAACGGCGCAACAGAGAGAGGGAGCGCGAAGAGGAGAGCCGGGCCCGCGAACGCGCCCGGTTGGAGAAACTCGCGGAGCGTGAGCGCGAGAAGGAGCTTGAGTCCATCAAGGAGCAGTACCTGGGCTCGAAAAAGCCGAAGAAGCGCGTCATCAAGCCCAGCGAGAAGTTCCGTTTCTCCTTCGACTGGGAGAACACCGAGGACACCTCGCGCGACATGAACTCCCTTTACCAGAACCCGCACGAGGCCCAGCTCCTCTTCGGCCGCGGGTTCCGCGCGGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGACATGCGAGACCAAATCCGGAAGAAAGACGGCCTGGAGGAGAGGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCTGCCGCCGACCTATACGACACCTTCGACATGCGCGTTGACCGGCACTGGAGCGAGAAGAAGCTGGAAGAGATGACAGAGAGGGATTGGCGTATCTTCAGAGAAGACTATAACATCTCCTACAAGGGTTCCAAGATTCCTCGTCCTATGAGGAGCTGGAATGAGAGCAAATTGACCAACGAGCTTCTGAAGGCGGTTGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAGATGGCTGCCATTCCACTTGGTTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGTAAAACCGCCGCCTTTGTGCTTCCCATGCTGAGTTACATCACCCGCCTTCCTCCCATAAGCGAAGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATTGAGGATGAGACTGTCAAGTTTGCTCAGTATTTGGGCATCAAGGTCGTCTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATTAGGCAGGGCTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGTTTGGAGCGCCGCTATGCTGTGCTCAACCAGTGCAACTATGTTGTTCTTGATGAGGCCGATCGTATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGTGTCCTCGATGCCATGCCTTCCAGCAATCTCAAACCGGAGAATGAGGATGAGGAGCTTGACGAGAAGAAGATTTACCGCACCACCTATATGTTCAGCGCCACCATGCCACCTGCTGTGGAGAGGCTTGCTAGGAAATATTTGAGGAACCCTGTTGTGGTCACCATTGGCACTGCTGGAAAGGCAACTGATTTGATCAGCCAGCATGTGATCATGATGAAGGAGGCCGAGAAGTTTTCCAAGCTTCATAGGTTGCTTGATGAGCTTAACGACAAGACTGCAATTGTGTTTGTTAACACCAAGAAGAATGCGGATCATGTTGCCAAGAATTTGGATAAGGATGGGTATCGCGTGACTACTTTGCACGGAGGGAAGTCGCAGGAGCAGAGGGAGATCAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCTACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGGATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACCACATTCTTGACTCTTCACGACTCTGATGTCTTCTATGACCTCAAGCAGATGCTTATTCAAAGTAACAGTCCTGTTCCACCTGAACTGGCAAGGCACGAAGCTTCAAAATTCAAGCCAGGAACTATTCCAGACAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAG | 2121 | 0.545 | MKRSNDDVAAPVPASTSKPVFLTKAQREQLALQRRQEEVADQKRRQEQLLSRNHSSDPKPSSDRDRDRERDRDHHRDRDRDRDRDRERERERARDRDREAERRNREREREEESRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDMRDQIRKKDGLEERPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWNESKLTNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKEAEKFSKLHRLLDELNDKTAIVFVNTKKNADHVAKNLDKDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH | 706 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma17g00043 | 706 | Pfam | DEAD/DEAH box helicase | 311 | 501 | IPR011545 | GO:0003676|GO:0005524 | |
| Gma17g00043 | 706 | SMART | ultradead3 | 305 | 527 | IPR014001 | - | |
| Gma17g00043 | 706 | MobiDBLite | consensus disorder prediction | 197 | 235 | - | - | |
| Gma17g00043 | 706 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 441 | 449 | IPR000629 | - | |
| Gma17g00043 | 706 | CDD | SF2_C_DEAD | 524 | 653 | - | - | |
| Gma17g00043 | 706 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 286 | 314 | IPR014014 | GO:0003724 | |
| Gma17g00043 | 706 | MobiDBLite | consensus disorder prediction | 674 | 706 | - | - | |
| Gma17g00043 | 706 | Coils | Coil | 90 | 134 | - | - | |
| Gma17g00043 | 706 | Coils | Coil | 204 | 224 | - | - | |
| Gma17g00043 | 706 | CDD | DEADc_DDX23 | 297 | 513 | - | - | |
| Gma17g00043 | 706 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 539 | 683 | IPR001650 | - | |
| Gma17g00043 | 706 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 362 | 665 | IPR027417 | - | |
| Gma17g00043 | 706 | SMART | helicmild6 | 563 | 644 | IPR001650 | - | |
| Gma17g00043 | 706 | MobiDBLite | consensus disorder prediction | 1 | 149 | - | - | |
| Gma17g00043 | 706 | Gene3D | - | 247 | 516 | IPR027417 | - | |
| Gma17g00043 | 706 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 63 | 699 | - | - | |
| Gma17g00043 | 706 | PANTHER | - | 63 | 699 | - | - | |
| Gma17g00043 | 706 | MobiDBLite | consensus disorder prediction | 681 | 706 | - | - | |
| Gma17g00043 | 706 | MobiDBLite | consensus disorder prediction | 30 | 145 | - | - | |
| Gma17g00043 | 706 | Pfam | Helicase conserved C-terminal domain | 536 | 644 | IPR001650 | - | |
| Gma17g00043 | 706 | Gene3D | - | 517 | 704 | IPR027417 | - | |
| Gma17g00043 | 706 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 317 | 512 | IPR014001 | - | |
| Gma17g00043 | 706 | Coils | Coil | 25 | 52 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma17g00043 | Gma-Chr17 | 471149 | 473725 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma17g00043 | 284 | 666 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.031 | 6.01e-63 | 213 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma17g00043 | K12858 | - | gmx:100792810 | 1156.35 |