Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00043 ATGAAACGCTCAAACGACGACGTCGCTGCCCCCGTCCCCGCCTCAACCTCCAAGCCAGTGTTCCTAACCAAAGCCCAACGCGAGCAATTGGCTCTCCAGCGCCGCCAGGAAGAAGTCGCCGACCAGAAGCGCCGCCAGGAGCAGCTCCTCTCCCGCAACCACTCCTCCGATCCCAAACCCTCCTCCGACCGCGACAGAGACAGAGAAAGAGACCGAGACCACCACCGAGACCGGGACCGCGATCGTGACAGAGACAGAGAACGCGAGCGCGAGAGGGCCCGCGATCGGGATCGCGAAGCCGAACGGCGCAACAGAGAGAGGGAGCGCGAAGAGGAGAGCCGGGCCCGCGAACGCGCCCGGTTGGAGAAACTCGCGGAGCGTGAGCGCGAGAAGGAGCTTGAGTCCATCAAGGAGCAGTACCTGGGCTCGAAAAAGCCGAAGAAGCGCGTCATCAAGCCCAGCGAGAAGTTCCGTTTCTCCTTCGACTGGGAGAACACCGAGGACACCTCGCGCGACATGAACTCCCTTTACCAGAACCCGCACGAGGCCCAGCTCCTCTTCGGCCGCGGGTTCCGCGCGGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGACATGCGAGACCAAATCCGGAAGAAAGACGGCCTGGAGGAGAGGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCTGCCGCCGACCTATACGACACCTTCGACATGCGCGTTGACCGGCACTGGAGCGAGAAGAAGCTGGAAGAGATGACAGAGAGGGATTGGCGTATCTTCAGAGAAGACTATAACATCTCCTACAAGGGTTCCAAGATTCCTCGTCCTATGAGGAGCTGGAATGAGAGCAAATTGACCAACGAGCTTCTGAAGGCGGTTGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAGATGGCTGCCATTCCACTTGGTTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGTAAAACCGCCGCCTTTGTGCTTCCCATGCTGAGTTACATCACCCGCCTTCCTCCCATAAGCGAAGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATTGAGGATGAGACTGTCAAGTTTGCTCAGTATTTGGGCATCAAGGTCGTCTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATTAGGCAGGGCTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGTTTGGAGCGCCGCTATGCTGTGCTCAACCAGTGCAACTATGTTGTTCTTGATGAGGCCGATCGTATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGTGTCCTCGATGCCATGCCTTCCAGCAATCTCAAACCGGAGAATGAGGATGAGGAGCTTGACGAGAAGAAGATTTACCGCACCACCTATATGTTCAGCGCCACCATGCCACCTGCTGTGGAGAGGCTTGCTAGGAAATATTTGAGGAACCCTGTTGTGGTCACCATTGGCACTGCTGGAAAGGCAACTGATTTGATCAGCCAGCATGTGATCATGATGAAGGAGGCCGAGAAGTTTTCCAAGCTTCATAGGTTGCTTGATGAGCTTAACGACAAGACTGCAATTGTGTTTGTTAACACCAAGAAGAATGCGGATCATGTTGCCAAGAATTTGGATAAGGATGGGTATCGCGTGACTACTTTGCACGGAGGGAAGTCGCAGGAGCAGAGGGAGATCAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCTACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGGATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACCACATTCTTGACTCTTCACGACTCTGATGTCTTCTATGACCTCAAGCAGATGCTTATTCAAAGTAACAGTCCTGTTCCACCTGAACTGGCAAGGCACGAAGCTTCAAAATTCAAGCCAGGAACTATTCCAGACAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAG 2121 0.545 MKRSNDDVAAPVPASTSKPVFLTKAQREQLALQRRQEEVADQKRRQEQLLSRNHSSDPKPSSDRDRDRERDRDHHRDRDRDRDRDRERERERARDRDREAERRNREREREEESRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDMRDQIRKKDGLEERPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWNESKLTNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKEAEKFSKLHRLLDELNDKTAIVFVNTKKNADHVAKNLDKDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH 706
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00043 706 Pfam DEAD/DEAH box helicase 311 501 IPR011545 GO:0003676|GO:0005524
Gma17g00043 706 SMART ultradead3 305 527 IPR014001 -
Gma17g00043 706 MobiDBLite consensus disorder prediction 197 235 - -
Gma17g00043 706 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 441 449 IPR000629 -
Gma17g00043 706 CDD SF2_C_DEAD 524 653 - -
Gma17g00043 706 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 286 314 IPR014014 GO:0003724
Gma17g00043 706 MobiDBLite consensus disorder prediction 674 706 - -
Gma17g00043 706 Coils Coil 90 134 - -
Gma17g00043 706 Coils Coil 204 224 - -
Gma17g00043 706 CDD DEADc_DDX23 297 513 - -
Gma17g00043 706 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 683 IPR001650 -
Gma17g00043 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 665 IPR027417 -
Gma17g00043 706 SMART helicmild6 563 644 IPR001650 -
Gma17g00043 706 MobiDBLite consensus disorder prediction 1 149 - -
Gma17g00043 706 Gene3D - 247 516 IPR027417 -
Gma17g00043 706 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 63 699 - -
Gma17g00043 706 PANTHER - 63 699 - -
Gma17g00043 706 MobiDBLite consensus disorder prediction 681 706 - -
Gma17g00043 706 MobiDBLite consensus disorder prediction 30 145 - -
Gma17g00043 706 Pfam Helicase conserved C-terminal domain 536 644 IPR001650 -
Gma17g00043 706 Gene3D - 517 704 IPR027417 -
Gma17g00043 706 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 317 512 IPR014001 -
Gma17g00043 706 Coils Coil 25 52 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma17g00043 Gma-Chr17 471149 473725 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00043 284 666 Eukaryotic Initiation Factors Gene Family AT3G19760 32.031 6.01e-63 213
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00043 K12858 - gmx:100792810 1156.35