Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00039 ATGGCAGACGTTGAGGTTGATGCGGCGGCAGCGGCAGGGGCAGCGCAGCCGAAGAAGAGAACGTTCAAGAAATTCAGCTTCAGGGGCGTGGATCTGGACGCGCTTCTGGACATGTCCACCGACGAACTGGTGAAGATGTTCAGTGCGCGTGCACGTAGAAGGTTCCAGAGAGGTCTGACGAGGAAGCCCATGGCCTTGATTAAGAAGCTCCGCAAAGCTAAAAGGGAAGCACCAGCAGGTGAGAAGCCAGAACCAGTGCGCACCCATCTCCGCAACATGATTATTGTGCCTGAGATGATTggtagcatcattggagtctacaacggcaagactttcaatcaggttgaaatcaaacccgagatgattggccattatctcgctgaattctctatttcatacaaacccgtcaagCATGGTAGGCCTGGTATTGGTGCCACTCACTCTTCCAGGTTCATTCCTCTCAAGTGA 468 0.4167 MADVEVDAAAAAGAAQPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00039 155 TIGRFAM uS19_arch: ribosomal protein uS19 22 155 IPR005713 GO:0003735|GO:0006412|GO:0015935
Gma17g00039 155 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 6 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma17g00039 155 Pfam Ribosomal protein S19 53 138 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma17g00039 155 SUPERFAMILY Ribosomal protein S19 58 139 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gma17g00039 155 PANTHER BNAA03G55820D PROTEIN 6 155 - -
Gma17g00039 155 ProSitePatterns Ribosomal protein S19 signature. 108 132 IPR020934 GO:0003723
Gma17g00039 155 Hamap 30S ribosomal protein S19 [rpsS]. 51 144 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma17g00039 155 Gene3D 30s Ribosomal Protein S19; Chain A 11 155 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gma17g00039 155 PRINTS Ribosomal protein S19 family signature 88 107 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma17g00039 155 PRINTS Ribosomal protein S19 family signature 108 120 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma17g00039 155 PRINTS Ribosomal protein S19 family signature 120 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma17g00039 155 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 9 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00039 Gma-Chr17 430815 431803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00039 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.097 3.16e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00039 K02958 - gmx:100777379 289.656