LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g00026	ATGGCAATTGCAGCTGCAAACTCATCACCCACCATGAGCCTCAGCCATAGCCAGAGCCAAGAGGATGCCACCACCGCCTCCACCACCAACAAGCCCGTCGACGTCGACGATAATGATGATCACGAGCACGACATGGTCATGCCCGGCTTTCGCTTCCACCCAACTGAAGAAGAGCTCGTGGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAGCTTATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCCGCCTTGGCAGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCCAGAGATAGGAAGTATCGCAACGGTGATCGTCCCAATCGTGTTACTACCTCTGGGTATTGGAAGGCAACAGGAGCTGATAGGATGATCCGAACCGAGAATTTTCGCTCTATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATACGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGTGTGTACAAGAGAGCTGGAGTGGAGGACCATCCTTCCCTCCCTCGCTGCCTCCCAACGAGGCCATCCTCGTCAAGGGCTTCTCATGACAATAATAAGAAGCACAATGAAATGGTTCAGCACAACATCAACATGGGATTCGTGGGACAATTAAAGCCGCCAACAACTGAACACATAGTTGACAAAATTAATGAAACGGAAGCAAGCAGTGATGTCAACACAGCTCTTGGACTTTCCAAATACAATGCTGCTTACCGTGCTGCAATGGGAGCACTCAGCACCACAATGGCACTTCCAGTTGTTCCAATGGATCATGAGGAAGGCTTGATGATGATGCAGCAGCAATCTAAGCAAGCTGCAGCACATGTTCCAACAATCTTCTCTGCTGGGCCTTCCAGTTCCAACAACAGTGGAGTGGTGAATATGGATGATCTGAATAGGCTAATGAGTTATCAACAGCAGTACTACAATGTTCAAAGCCAAAGCCATCCCAATCAGTTCTCCACTTTGCTGATGCAACCTTCAGCGGTagtgtctctcagctcgctaccaaatccacttccacccaccttctctgaccgactctgggactggaatccaatccctgagcCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA	1212	0.4513	MAIAAANSSPTMSLSHSQSQEDATTASTTNKPVDVDDNDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASHDNNKKHNEMVQHNINMGFVGQLKPPTTEHIVDKINETEASSDVNTALGLSKYNAAYRAAMGALSTTMALPVVPMDHEEGLMMMQQQSKQAAAHVPTIFSAGPSSSNNSGVVNMDDLNRLMSYQQQYYNVQSQSHPNQFSTLLMQPSAVVSLSSLPNPLPPTFSDRLWDWNPIPEPPNQEYSNMSFK	403

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma17g00026	403	MobiDBLite	consensus disorder prediction	1	40	-	-
Gma17g00026	403	ProSiteProfiles	NAC domain profile.	46	193	IPR003441	GO:0003677\|GO:0006355
Gma17g00026	403	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	27	398	-	-
Gma17g00026	403	Pfam	No apical meristem (NAM) protein	48	172	IPR003441	GO:0003677\|GO:0006355
Gma17g00026	403	MobiDBLite	consensus disorder prediction	199	220	-	-
Gma17g00026	403	MobiDBLite	consensus disorder prediction	1	32	-	-
Gma17g00026	403	SUPERFAMILY	NAC domain	46	192	IPR036093	GO:0003677\|GO:0006355
Gma17g00026	403	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 72-LIKE	27	398	-	-
Gma17g00026	403	Gene3D	NAC domain	55	196	IPR036093	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g00026	Gma-Chr17	317615	319980	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma17g00026	45	209	NAC Transcription Factor Family	AT2G02450	92.121	1.38e-113	337

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Gma17g00026		NAM	4.1e-34	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma17g00026	-		-	gmx:100792622	781.171

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