Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00023 ATGTCAGAAATGCGGGTATCTGAGCTTCACTTGAAGAAGGAACTCACCCAAATCCGCAAGGCTGCTCGAGTACTCAGAGATCCTGGCACCACTTCTTCTTGGAAGTCACCACTCAGTTCATCAAGATCTGTGGCTGCATGGAACAAAGACACTGCCAGTAGAAGGTTCACTACCCCCAATGACAAAGACAAGGACAAGGACAAGAGGGTGTTCTTGTACAACTGGAAGAACTACAAATCTTCCAGTGAGAAATACAACGATGAGGAAGAAGAAGAAGATGATGATGACGATGGATCTTCTTCGCTTCTCGGGGACAGAGACAGAGATAGTTTGAGTGATGCTCGCAATGGTTGTGACTCAAAGAGTGATACTTACTTGGCTGCTGCCGATGGTGGCGGCGGCGCTCGTTCTTCCATTTTCCGATGTGGGGATGCCAATCTTGTTTCCAGAAGAGCGGTTCCAGTTAAGAAAAAGAGTAAGAAAAATAACCCACATTTTGATTTTTTAGCAAAGTATCAACACCATAGACCAGGGAGAAAAAAATTGAGTTCTTCCAAGGCATTGCTAGAAGGACATCCTTCGCCTTTTTTTAACAGGGATGACTCGGTTGAACACTCTGATGATGATACCGAGGATTACACTAATTCCGAGGGTGTGAGACCAATTTCGGGGACTTCCCCTTTGCTTCTCAAACTCAGGCAAAAGAACTGGTCTCGCTCTTCCTCCAAGTTCTTGAGAAGAAGCCGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTACGGTCACCGTTATCCCAGCACTCTTGGATCCTGGGATGGAACCACCACCTCGGTCAATGATGGCGACGGCGACGATGAGATTGATGATCATTTGGATTTGCCTGGCCGTCAAGGATGTGGAATTCCTTGCTACTGGTCCAAGAGAACTCCTAAACATAGACGGATGTGTGGGAGTTGTTATTCTCCTTCGCTGTCGGATACTTTGAGGAGAAAAGGGAGTAGCATGCTCTGTGGAAGTCAAAGTATTTATCCAACACACCGTAGATCAGCTTCGGCTTCTCACAAGCGGAGACTCTCTTTGAGGAGTGCTCGAGGTGTTATTCCATTGCTCACTAACAGTGGTGATGTTAGAGAAGGGTCGTCTGTGGGAACCGGTTGGAGTGATGACGAGCTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCATCGAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAATATGAGAGCACACCAGAAAATAATCGGAGTTTCAGCCAGAAGTATAGGCCCATGTTCTTTGGTGAACTGTTTGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCTGTTTCAAGGGGACGGATTGCTCCCGTCTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACATCAACAGCTAGGATATTTGCTGCTGCCTTGAATTGTGCAAGTCCTGATGAGAGCAAACCTTGTGGCTACTGCAGGGAATGTGTTGATTTCATTTCTGGTAAGAGCAGTGATCTATTGGAAGTTGATGGAACTAATAAGAGAGGAATTGATAAGGCTAGATATCTACTAAAACGATTGTCAAGTGGATCATCATCAGCCTCCCCACAATATACAATTTTTGTTATTGATGAGTGTCACCTGTTGCCCTCCAAGACATGGTTGGGATTTCTTAAGTTTCTGGAAGAACCACCCCTGCGAGTAGTATTCATTTTTATAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTAGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGATCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCAATGTCGTCAGATACTGTAGAGACAGTGAAAAGAGCCAGAGAACTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCCGGTCTTATCATGGATATCATTGCTGGATCATATGCAGTCATTGACACCAAACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAAAATGCTTTGAAGCTTCTCTCGGAGGCAGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCACAGCAACTCTATTGCAGCTTGGTTCTACACCTTCTCCTGATCTTACTCAGTCAAGTAGCAGTAGGAGACAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCGAGAGACGTTACCTCTTGCACGCATAAGTCAGACCCTCAATACGTGCCTCAAAAGTCAGCATACACTGCATCCCAGCAAAAAGCCGTAAATGATAATTCCCACCATCAAAAGGATATATCCTCAAAGATTGAAGGTTTCAGCTTGAAATCAAAGCCGTCAAGCAGCCCAGTCATAGATGATGGCTCCACAGTGGTCTCATCTGATGATCTTATGGTTGGGAATACAATGTTTAGGTGCATAGATTCAGGGAAGTTATGTTACATCTGGGTGCATTGTATTGAGAGGTGTCACTCGAAGACATTGAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCCGTATGTGAAGTAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGAGGATGCAGATATTAAAGTTAGGGTTGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTAAGAATAATCCATTTGCCAAATGGCGAAGGTGAAAATCAAGTTAATCTACCGGGCCTAAAGCAGGCAGAGTCAACAGTGGCTGGTGAGAAGGAACAAAGAAAGAGTCATATGAACGGAACGGAGTCTTATTCTAGTTTTCCTCCTTTGCTGGATGGAAACCTTCAATCTACCGCTGCTTCATCAGATATTTTGGCTGAAGGAAATGGTGTGAGGGAGAGGAGACAGGATAATCCAATGCAAAGAATTGAATCCATCATTCGTGAACAGAGGCTGGAAACTGCCTGGTTACAGGCAGTTGAAAAGGGTTCCCCTGGATCATTGAGTCGGTTGAGACCTGAGAAGAATCAAGTACTGCCACAGAATGGTGTGGACCCAATTGAGTCCATGGATTCAACGAGATTTCCCTCTCACCAGCATTGGGAAGATGATCCAAATGATGAAGTCAAAGTTTTAAGCCTTAAAAATGGAAGGATCCCACAGAAGGATCAGATTGGTCGAAAGACAGATCGTTTTCCCATGTCACCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATCTGGGATATGAATCAGGGTCAGGAGCGGGTGGTTGTGGATTTTTATGTTGGAATAAGTCCAAGCCTAGAAGGGTTATAAAGGTCAAAGGTGGCACCCCGGTTAGAGCGGGTAGAGCGGCAACTTTTACATTGTTTGGTGACTGCACTAAGCCAAATAAAAGGGGGCGGGGAAGATAA 3711 0.4417 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNKDTASRRFTTPNDKDKDKDKRVFLYNWKNYKSSSEKYNDEEEEEDDDDDGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAADGGGGARSSIFRCGDANLVSRRAVPVKKKSKKNNPHFDFLAKYQHHRPGRKKLSSSKALLEGHPSPFFNRDDSVEHSDDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRRMCGSCYSPSLSDTLRRKGSSMLCGSQSIYPTHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTGWSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYESTPENNRSFSQKYRPMFFGELFGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDESKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSSGSSSASPQYTIFVIDECHLLPSKTWLGFLKFLEEPPLRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSCTHKSDPQYVPQKSAYTASQQKAVNDNSHHQKDISSKIEGFSLKSKPSSSPVIDDGSTVVSSDDLMVGNTMFRCIDSGKLCYIWVHCIERCHSKTLRQLLHNHGKLVSVCEVEGVLVAYVAFEDADIKVRVERFLRSITNSMEMVLRRNVEVRIIHLPNGEGENQVNLPGLKQAESTVAGEKEQRKSHMNGTESYSSFPPLLDGNLQSTAASSDILAEGNGVRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDPIESMDSTRFPSHQHWEDDPNDEVKVLSLKNGRIPQKDQIGRKTDRFPMSPSLLHDNSLATISGKDNLGYESGSGAGGCGFLCWNKSKPRRVIKVKGGTPVRAGRAATFTLFGDCTKPNKRGRGR 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00023 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 673 IPR027417 -
Gma17g00023 1236 SUPERFAMILY post-AAA+ oligomerization domain-like 697 798 IPR008921 GO:0003677|GO:0006260
Gma17g00023 1236 CDD HLD_clamp_pol_III_gamma_tau 626 689 IPR045085 -
Gma17g00023 1236 Pfam DNA polymerase III subunits gamma and tau domain III 680 799 IPR022754 GO:0003887
Gma17g00023 1236 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 177 1174 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 803 866 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 101 116 - -
Gma17g00023 1236 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 451 800 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gma17g00023 1236 SMART AAA_5 483 633 IPR003593 -
Gma17g00023 1236 Coils Coil 759 789 - -
Gma17g00023 1236 Gene3D - 442 624 IPR027417 -
Gma17g00023 1236 CDD AAA 465 623 - -
Gma17g00023 1236 PANTHER PROTEIN STICHEL-LIKE 1 177 1174 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 83 122 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 1010 1033 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 22 65 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 153 225 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 803 817 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 29 54 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 828 860 - -
Gma17g00023 1236 Gene3D - 628 689 - -
Gma17g00023 1236 MobiDBLite consensus disorder prediction 86 100 - -
Gma17g00023 1236 Pfam DNA polymerase III, delta subunit 466 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00023 Gma-Chr17 279504 291474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00023 447 741 Core DNA Replication Machinery Family AT1G21690 24.013 4.24e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00023 - - gmx:100791561 2331.6