Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01786 ATGGGACGCGAAGCGACGAAGAAGAAGAAGATGAAGAAGAATGCAAAATCTGGGGGTTTTGAATCACTTGGTCTGAATCCCAATGTGTTCAAAGGAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCAATTCAGCGGAAGACCATGCCCCTCATCCTTTCTGGCTCCGACGTCGTTGCCATGGCTCGCACGGGCTCTGGCAAAACGGCAGCGTTTCTTGTCCCCATGCTTCACCGCCTCAATCAGCATATCCCTCAGTCTGGTGTCAGAGCCCTCATCCTATCCCCTACCAGGGACTTGGCCCTTCAAACTCTTAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTGTTAGTTGGTGGAGATAGTATGGAGAGTCAGTTTGAGGAATTAGCTCAGAGTCCTGACATCATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCATTGCGCAGCGTCGAGTATGTTGTTTTCGACGAGGCTGATTGTTTATTTGGCATGGGTTTCGCCGAGCAGTTGCATCAGATTCTTGCTCAGCTCGGGGAGAACCGTCAGACCTTGCTTTTCAGTGCCACACTGCCCAGTGCTCTTGCTGAATTTGCCAAGGCTGGCTTGAGAGACCCTCAGCTTCTCCGCCTCGACTTGGAAACTCGAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAAGAGAAGTACTCCGCGTTGCTGTATTTGATTAGGGAGCACATTGGTTCTGATCAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTGGAGTTTCTCAACCTTTTGTTTCGTGAAGAGGGTATCGAGCCATCTGTGTGTTATGGCGACATGGATCAAGATGCTCGCAAAATCCATGTATCAAGGTTTAGGTCTAGAAAGACAATGTTGTTGATTGTGACAGACGTTGCGGCCCGGGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTACTGCATATTCTTTTGTGACTCCTGAGGATATGGCTTACCTTTTGGATCTTCATTTGTTTCTTTCGAAACCAATCAAACCTGCTCCCACCGAAGAAGAGGTCTTGCAGGATATGGAAGGAGTATTGTCTAGATGTGAACAGGCAATGGCAAATAGAGAAACTATTTATGGTCGTTTCCCGCAAAAAGTCATCGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCGGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTGTATTCAAAAACAAAACCCTTACCCGCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCTCACGAAGGGCTGCATCCAATGTTCATGAATGTGTTGGAAACAGGGGAGTTAACGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGGGAAGCAGCTAAATTAAAGCATCAACAGGGCCCTTCTGGCCAATGGGCCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGCAGCAGTCGAAGAGTAATAAGGAAAAGGAGGAAATTCAATTGGAAATCAGTCCTTCCATGGAGAAAGGAAGAAAAGCATGTGGTTCTAAGAGAAAGCCCCAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCTAATGAAGACTTTGCTTCTAATAGATTGGAAGCAGCTGTCCTCGATCTAGTGGCAGATGATGGTGCTGGCATTCAGAAGCAAAGATCTATGTATCACTGGGATAAGAGGGGTAAAAAGTACATCAAGTTAAACAATGGTGATCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCAAACAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACATGTTAGGATATCACTTAAAGGGACAAATAATGGTGATCCTCAGGATTCAACAAGTTTGACAGGATCTTACCAAAGAGGTCGTAGTAATTTTAAAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAACTCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGACAAAGGCCAACAGGGTTTCTTATATAAAGAGCAAGTCGACAAAGGGTAAAAGACATCCTAGGCAGCAGCAGTATCTATCTATTCACTTCTTTGTTGTACTTCCAACTCACTCATCTCAGCGTATGGCTTCTGGGGATCTGTGCAAAGACTCAATGAAAGATACTCCCACCGATTGTGTGGTTCCTATAACTCCCGAGGCTGTCACCGAGAATGGGGATTTGCAATCTCAATCCCCTCTCACACTCTCAGTGGTCAGGAAACAACTCATACGTGCGTGCATTGATTGCGATTCTGACCGTGCCTTGGTTGATAATAATAATAATGACATTGGTATCCCCCGAACTCCTAAGGACGGTGTTTTTGACCCCTTTGCACCTGGTCCTGATAACATGGCGCGGGCACCTAACAGTAACAAGTATCTTGACGAGTATAGGACCACCGTTGCCCGGCGGCTTGATTTCCATCCCTCCTTTGATGTTGTTGCTGAAGCAGATTCTGATACTCTTTCAGATGAGAAAATGGTTGAATCAGTATATGAGAATCTTTTGCAAGTTATTGTTTCTAAGCAAGCTGAGGGTGCTCTTGCTCAAATGTCCGACGATTGTGAAACACCCCCATCTGTACTCCGCTTCACTGGAATTGCTGATACTTGTCCTGGTGCACCTATGAAACCAGCGGCTAAACCTAGGAACATTGATTTTGGGTTGTGCAAGAAGCTTGAATTCTGA 2970 0.4475 MGREATKKKKMKKNAKSGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLLRLDLETRISPDLKLAFFTLRQEEKYSALLYLIREHIGSDQQTLIFVSTKHHVEFLNLLFREEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEEVLQDMEGVLSRCEQAMANRETIYGRFPQKVIDLVSDRVREIIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPHEGLHPMFMNVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKLKHQQGPSGQWADVMKRKRAIHENIINLVHEQQQSKSNKEKEEIQLEISPSMEKGRKACGSKRKPQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLEAAVLDLVADDGAGIQKQRSMYHWDKRGKKYIKLNNGDRVAANGKIKTESGAKTKANKTGIYKKWKERSHVRISLKGTNNGDPQDSTSLTGSYQRGRSNFKGSKKQHSMPNAHVRSELKDMDQIRKERQTKANRVSYIKSKSTKGKRHPRQQQYLSIHFFVVLPTHSSQRMASGDLCKDSMKDTPTDCVVPITPEAVTENGDLQSQSPLTLSVVRKQLIRACIDCDSDRALVDNNNNDIGIPRTPKDGVFDPFAPGPDNMARAPNSNKYLDEYRTTVARRLDFHPSFDVVAEADSDTLSDEKMVESVYENLLQVIVSKQAEGALAQMSDDCETPPSVLRFTGIADTCPGAPMKPAAKPRNIDFGLCKKLEF 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01786 989 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Gma16g01786 989 Gene3D - 237 465 IPR027417 -
Gma16g01786 989 MobiDBLite consensus disorder prediction 728 752 - -
Gma16g01786 989 MobiDBLite consensus disorder prediction 1 20 - -
Gma16g01786 989 SMART ultradead3 37 244 IPR014001 -
Gma16g01786 989 CDD DEADc_DDX54 18 223 - -
Gma16g01786 989 SMART helicmild6 275 356 IPR001650 -
Gma16g01786 989 CDD SF2_C_DEAD 244 365 - -
Gma16g01786 989 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Gma16g01786 989 Pfam DBP10CT (NUC160) domain 624 685 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Gma16g01786 989 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Gma16g01786 989 Gene3D - 2 225 IPR027417 -
Gma16g01786 989 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Gma16g01786 989 SMART DBP10CT_2 624 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Gma16g01786 989 MobiDBLite consensus disorder prediction 693 768 - -
Gma16g01786 989 Pfam DEAD/DEAH box helicase 42 208 IPR011545 GO:0003676|GO:0005524
Gma16g01786 989 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Gma16g01786 989 MobiDBLite consensus disorder prediction 693 724 - -
Gma16g01786 989 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 772 - -
Gma16g01786 989 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 5 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01786 Gma-Chr16 39034958 39043851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01786 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.202 7.94e-58 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01786 K14808 - gmx:100817417 1481.46