Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01756 ATGGCTAATTTTGAAGACCGTGAGCTGCTGATGATGTCAGAAACAGATGCACAATCATATGATGAAACTTTGCACTCTAAATTCCAAAGGCTTTTATCCAGGACACAAAGTGCATCAGTTTCTATTCCCATGGAGTCATATGAGAGAAAAACTAGTATTGTGGGACATAGTGGTTCACTCTATGCTAATGCTACACCAGGAACTGATAATCTCTTGCAGCATAGTATAGTTGTAACAGGAAACAAAACAGAGGAGAGCAAGACAGATAAATTTGCTACTTTCATCAGCACAGATAAATTTGATAGTAAAAATGAACATTTACTGATATCCGGACAACTGGGAATTTGTAATGATCCTTATTGTACTACTTGTCCTACTTACTTCGAGGCTTCTCAGCTAAGAAATCCAAAAGCTTCAATTCTATCTGATCCCAAGTTCCACAATGCTCTTTATGGGGATGCCAAGGGTTTCGCTAGAAAACTTTTTTCCTTCTGTTCTTCTTTTGTTCCTGGAGTTATGAACCCTCACTCTAAATTCATACAACATTGGAACAAGGTTCTCGCCACTTTTTGCTTGGTTGCAATTTTTGTGGATCCATTATTTTTCTTCTTACTCTATGTTCGTCAGGATTTTAATTGCATAGTTGTCAACTGGAAATTGACAAAAGCACTTGTTATAGTTAGAAGCATGAATGACTTCATATATTGTCTTAACATTCTTCTCCAGTTTAGGTTGGCTTTTGTTTCTCCTGAGTCGAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCGTTACCTGAAGGGTTATTTTCTTATTGACTTATTTGTTGTATTTCCTCTTCCTCAGGTAATGTTATTGTCTGTCCTACCAAATTCCTTGAGGGGAGCAAATTATGCTAAAAATGTCCTGCGTGCAGCGATCCTAGTACAATATATTCCCAGATTATTCAGGTTTCTGCCTATGCTGTTTGGCCAATCTCCTGCAGGATTCATATTTGAGTCAGCATGGGCAAATTTCATAATAAACCTTCTTATTTTTATGCTAGCTAGCCATGTTGTTGGCTCTTGCTGGTACCTCTTTGCACTACAGAGGGTTAATCAATGTTTTCGAAATGCATGCCATACTTCTAATATACCTGGATGCCTGACATTCATTGATTGTGGACATAGCCATAATGGACACAATCAGCCTGGTCTATCATCAAACCAGTGGAACAACCATATAGATGCTATTGCGTGTTGGAATTCCTCTTCCGGTGGTTCTTTTGCTTACGGGATTTACGCCAATGCTGTACCTCTTACTACACAAACAGACATGGTCATCAAATACATATATGCTCTATTTTGGGGATTACAGCAAATCAGTACTCTGGCTGGTAACCAAACACCTAGCGATTTTGTGTGGGAAGTCCTTTTTACTATGGCCATCGTGGGATTGGGACTTTTTCTTTTTGCACTTCTCATTGGAAACATACAGAACTTTCTTCAAGGTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGAAGCCGTGATGTTGAGCAATGGATGAGTCATCGGCGCTTACCCGAATACCTAAGAAGGAAAGTACGAGAGGCTGAACGGTATAGTTGGACCGCAACAAGGGGGGTGAATGAAGCAGTGCTAATGGAGAATTTTCCAGAAGATCTCCAAGTGGACATAAGACGCCATCTCTTCAAATTTGTTAAGAAAGTTCGGATTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGCACGAGATTAAGACAGTCGACATACATCAAAGGAAGTAGAATTTTGAGTCATGGTGCTGTGGTAGACAAGATGCTATTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACTAGGATTCCTTTATCTGAAGGGGATGCTTGTGGTGAAGAACTCCTAACGTGGTATCTTGAGCATTCTTCAGTGAGCACGGATGGAAGAAGAGTTAGGCTTCCAGGACAGAGGCTGCTTAGCAACAGGACAGTAAGATGCTTAACAAATGTGGAAGCACTTTCACTCCGAGCTGCAAACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGTAGTTTGCGTGTTCAAGGAGCCTTAAGGTATGAATCACCCTATTGGAGATCCCTTGCAGCAATCCGCATTCAGGTTGCATGGAGATACAGGAAGAAACGACTAAGTCATGCTGATTCCTCTCTTCAAGATTAA 2244 0.4073 MANFEDRELLMMSETDAQSYDETLHSKFQRLLSRTQSASVSIPMESYERKTSIVGHSGSLYANATPGTDNLLQHSIVVTGNKTEESKTDKFATFISTDKFDSKNEHLLISGQLGICNDPYCTTCPTYFEASQLRNPKASILSDPKFHNALYGDAKGFARKLFSFCSSFVPGVMNPHSKFIQHWNKVLATFCLVAIFVDPLFFFLLYVRQDFNCIVVNWKLTKALVIVRSMNDFIYCLNILLQFRLAFVSPESRVVGAGDLVDHPKKIALRYLKGYFLIDLFVVFPLPQVMLLSVLPNSLRGANYAKNVLRAAILVQYIPRLFRFLPMLFGQSPAGFIFESAWANFIINLLIFMLASHVVGSCWYLFALQRVNQCFRNACHTSNIPGCLTFIDCGHSHNGHNQPGLSSNQWNNHIDAIACWNSSSGGSFAYGIYANAVPLTTQTDMVIKYIYALFWGLQQISTLAGNQTPSDFVWEVLFTMAIVGLGLFLFALLIGNIQNFLQGLGRRRLEMQLRSRDVEQWMSHRRLPEYLRRKVREAERYSWTATRGVNEAVLMENFPEDLQVDIRRHLFKFVKKVRIFALMDEPILDAICTRLRQSTYIKGSRILSHGAVVDKMLFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRRVRLPGQRLLSNRTVRCLTNVEALSLRAANLEEVTILFTRFLRSLRVQGALRYESPYWRSLAAIRIQVAWRYRKKRLSHADSSLQD 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01756 747 Pfam Ion transport protein 185 506 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma16g01756 747 SUPERFAMILY Voltage-gated potassium channels 175 507 - -
Gma16g01756 747 Gene3D Helix hairpin bin 506 571 - -
Gma16g01756 747 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 744 - -
Gma16g01756 747 SMART cnmp_10 579 711 IPR000595 -
Gma16g01756 747 CDD CAP_ED 579 695 IPR000595 -
Gma16g01756 747 SUPERFAMILY cAMP-binding domain-like 507 702 IPR018490 -
Gma16g01756 747 ProSiteProfiles cAMP/cGMP binding motif profile. 579 647 IPR000595 -
Gma16g01756 747 Gene3D Jelly Rolls 577 701 IPR014710 -
Gma16g01756 747 Gene3D - 185 503 - -
Gma16g01756 747 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01756 Gma-Chr16 38744244 38753760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01756 5 657 Ion Channels AT3G17700 55.572 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01756 K05391 - gsj:114390051 1497.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01756 16 38744244 38753760 Gma09g01583 09 41070442 41079269 GST