Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01753 ATGGAGTTTGGAAGTGGTTCTCCTGGTGATCGCCATCATCACCATGATGGTTCTTCTGATTCCCAGCGAAGGAAGAAGCGTTACCACCGTCACACAGCTAACCAGATTCAAAGGCTTGAATCGATGTTCAAGGAGTGTCCGCACCCAGATGAGAAGCAGAGATTGCAGTTGAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGATAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGTCCTCCTATGAATGATGATTGTTATTTTGATGAACAGAAGTTGAGATTGGAGAATGCCCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATTGGAAGGCCAATTTCTCAACTCCCACCTGTTCAGCCTATCCACATATCTTCTCTGGACTTGTCAATGGGGACTTTTGCAAGCCAAGGGTTGGGTGGCCCTTCCCTTGATCTTGATCTTCTCCCAGGGAGTTCTTCATCATCCATGCCGAATGTGCCTCCTTTCCAACCCCCTTGTCTTTCGGACATGGATAAGTCCCTCATGTCAGACATTGCCTCAAATGCCATGGAGGAAATGATCAGGCTATTGCAAACAAATGAGCCCTTGTGGATGAAAGGTGCTGATGGGAGGGATGTGCTTGATCTTGATTCCTATGAAAGGATGTTCCCCAAGGCTAATAGTCACTTGAAGAACCCCAATGTTCACGTTGAAGCTTCTAGAGATTCAGGAGTTGTTATTATGAATGGCTTAACTTTGGTTGACATGTTTATGGACCCGAACAAGTGGATGGAGCTATTTTCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTGGCCATGGTGGTTCTTTGCAATTGATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAATTCTATTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTATGGGCAATAGTAGATGTTTCATATGATTTTACTCAAGATAACCAATTTGCTCCTCAATTTCGATCTCACCGTCTTCCTTCTGGTGTCTTTATCCAAGACATGCCTAATGGATATTCCAAGGTTACTTGGATTGAACATGTAGAGATTGAAGACAAAACCCCAGTTCATAGGCTCTATAGAAACATTATTTACAGTGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTTCAGAGGATGTGTGAAAGGATTGCTTGTCTATTGGTGACAGGAAATTCAACCCGTGATCTTGGAGGAGTGATTCCTTCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCACAAAGAATGGTCACCAATTTTTGTGCAAGCATTAGTTCATCAGCTGGCCACAGATGGACCACACTCTCTGGGAGTGGCATGAATGAGGTTGGAGTCAGAGTCACTGTGCACAAGAGCTCAGACCCTGGCCAACCTAATGGTGTGGTTCTAAGTGCAGCTACCACCATTTGGCTCCCCATCCCTCCACAAACTGTGTTCAATTTCTTTAAGGATGAAAAGAAAAGGCCTCAGTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGTTCCCTAGTGGTGTACTGTCCAGTTGATCTGCCAGCCATCAACATAGCAATGAGTGGTGAGGACCCTTCTTACATCCCTCTCCTTCCCTCAGGTTTCACCATTTCCCCGGACGGCCAAGCCGACCAAGACGGCGGAGGAGCCTCAACCAGCACAAGCAGCAGGGTCATGGGGGGTGGTTCTGGTTCTGGTGGCTCACTCATCACTGTTGCATTCCAAATCCTAGTGAGTAGCTTGCCATCTGCCAAACTCAACATGGAGTCGGTGACAACTGTTAATAGCCTCATTGGCAACACTGTCCAACACATTAAGGCTGCTTTGAATTGTCCTAGTTCCTGA 2157 0.4599 MEFGSGSPGDRHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPMNDDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGTFASQGLGGPSLDLDLLPGSSSSSMPNVPPFQPPCLSDMDKSLMSDIASNAMEEMIRLLQTNEPLWMKGADGRDVLDLDSYERMFPKANSHLKNPNVHVEASRDSGVVIMNGLTLVDMFMDPNKWMELFSTIVTMARTIEVISSGMMGGHGGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFTQDNQFAPQFRSHRLPSGVFIQDMPNGYSKVTWIEHVEIEDKTPVHRLYRNIIYSGIAFGAQRWLTTLQRMCERIACLLVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISSSAGHRWTTLSGSGMNEVGVRVTVHKSSDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEKKRPQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNSSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQADQDGGGASTSTSSRVMGGGSGSGGSLITVAFQILVSSLPSAKLNMESVTTVNSLIGNTVQHIKAALNCPSS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01753 718 MobiDBLite consensus disorder prediction 649 666 - -
Gma16g01753 718 CDD homeodomain 24 83 IPR001356 GO:0003677
Gma16g01753 718 Coils Coil 130 150 - -
Gma16g01753 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 716 IPR042160 -
Gma16g01753 718 SMART HOX_1 23 86 IPR001356 GO:0003677
Gma16g01753 718 MobiDBLite consensus disorder prediction 643 666 - -
Gma16g01753 718 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Gma16g01753 718 MobiDBLite consensus disorder prediction 1 23 - -
Gma16g01753 718 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Gma16g01753 718 SUPERFAMILY Bet v1-like 469 710 - -
Gma16g01753 718 SUPERFAMILY Bet v1-like 216 449 - -
Gma16g01753 718 Pfam START domain 225 448 IPR002913 GO:0008289
Gma16g01753 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 16 716 - -
Gma16g01753 718 SMART START_1 224 448 IPR002913 GO:0008289
Gma16g01753 718 CDD START_ArGLABRA2_like 219 447 - -
Gma16g01753 718 Gene3D - 10 96 - -
Gma16g01753 718 MobiDBLite consensus disorder prediction 1 32 - -
Gma16g01753 718 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Gma16g01753 718 Gene3D - 225 448 IPR023393 -
Gma16g01753 718 SUPERFAMILY Homeodomain-like 6 82 IPR009057 -
Gma16g01753 718 ProSiteProfiles START domain profile. 215 451 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01753 Gma-Chr16 38694601 38698098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01753 20 718 Homeobox Transcription Factor Family AT1G73360 66.950 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma16g01753 START 5.9e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01753 K09338 - gmx:100785023 1368.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01753 16 38694601 38698098 Gma09g01579 09 40993985 40997390 GST
Gma05g02410 05 44875319 44878198 Gma16g01753 16 38694601 38698098 PCT
Gma08g00548 08 4502389 4505890 Gma16g01753 16 38694601 38698098 PCT
Gma16g01753 16 38694601 38698098 Gma05g02410 05 44875319 44878198 PCT
Gma16g01753 16 38694601 38698098 Gma08g00548 08 4502389 4505890 PCT