Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01751 ATGGCTAACAACGTCGTTGTTGTTCTTAAGGTAGCTCCTGTTTCTCTGCCTCCATTTCCCATAACAAACAATGCTCTCACTTTCAAGAGCCAAAGACACACACTTCATCTGAATTGCTTCCAAACCAAAAACAGAACAACCTCATTCCCTTCTTCCTCGTCAATCCTCAGAAACAAAGCTAGTTGCTCTGTGTTGGCGTGTCTCCCTCCTGAATCCTCAACCTCATCTTCCACTGCTAAACCCTCTTTTCCTTCTCCTCAAACTAAGCTTTATGTCAGTGGGCTATCATTTCGTACCACTGAAGAGAGTTTGCGAAATGCATTTAAGAATTTTGGTCAACTTGTGGAAGTCAAGCTGGTGATGGATAGAATTGCTAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAACTGAAGAAGAGTCGCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGAAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGTTAGCGCCAAGGAAACAGGAAGACACTAGATTGTAA 543 0.4309 MANNVVVVLKVAPVSLPPFPITNNALTFKSQRHTLHLNCFQTKNRTTSFPSSSSILRNKASCSVLACLPPESSTSSSTAKPSFPSPQTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELAPRKQEDTRL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01751 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Gma16g01751 180 PANTHER NUCLEOLAR PROTEIN 8 10 176 - -
Gma16g01751 180 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC 10 176 - -
Gma16g01751 180 SUPERFAMILY RNA-binding domain, RBD 77 172 IPR035979 GO:0003676
Gma16g01751 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 159 IPR000504 GO:0003723
Gma16g01751 180 Gene3D - 43 178 IPR012677 -
Gma16g01751 180 SMART rrm1_1 89 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01751 Gma-Chr16 38656635 38659864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01751 79 176 Eukaryotic Initiation Factors Gene Family AT3G16380 35.714 1.33e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01751 - K13195 gmx:100305561 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01751 16 38656635 38659864 Gma09g01577 09 40956834 40959713 GST