Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01748 ATGGTCAGAAAGAGAAGAACTGAACTACCAAGTGGGGGTGAAAGCTCTGAGGCTCAACACCCTTCTGAAAGGAGTGCACCACCGCCCCAACAACAAGCTGCTGCTGCTGCCCCAGGAGGGGCTGGACCCCAAGGAGGCAGAGGCTGGGGTCCCCAAGGAGGAAGAGGAGGGGGCCGCAGCCGTGGGATGCCCCAACAGCAATATGGTGCCCCTCCTGATTATCAAGGTAGGGGAAGGGGAGGGCCTTCTCAGCAAGGAGGCCGTGGAGGATATGGCAGTGGCCGAAGTGGTGGTGGTGGTGGTGGTATGGGCAGTGGCCGTGGCGTTGGTCCTTCATATGGTGGCCCATCGAGGCCACCGGCACCCGAGCTGCACCAAGCAACCTCAGTTCAGTCATATCAAACTGGGGTGAGTTCTCAGCCTGCATCATCTGAGGCCAGTTCATCCCTGCCGCCAGAGCCTATTGATTTGGAACAGTCAATGGGGCAGATGGTGCTTCATTCTGAACCTGCTCCTACTCCTCCTCCTGCAAGTAAATCATCAATGAGGTTTCCCCTTCGACCTGGAAAGGGTAGCTATGGCACCAAGTGTGTTGTTAAGGCTAATCATTTCTTTGCTGAGTTACCCAACAAAGATCTGCATCAATATGATGTTACAATTACTCCAGAAGTGATATCAAGAGGGGTGAACCGTGCTGTTATGGAGCAGTTGGTGAGACTGTACCGGGAATCTCACTTGGGTAAGAGACTCCCTGCTTATGATGGACGCAAGAGCCTCTATACTGCTGGACCACTTCCTTTTATGTCAAAGGAGTTCAGAATTGTTCTCGTTGATGATGATGAAGGAGCTGGAGGCCAGAGGAGGGACAGGGAGTTCAAGGTTGTGATAAAATTGGCTGCACGTGCAGACCTTCACCATTTGGGACTCTTTTTACAAGGAAGGCAAACTGATGCTCCTCAAGAGGCTTTGCAGGTCCTTGACATTGTTCTGCGCGAACTCCCTACTACAAGGTATTGTCCTGTTGGAAGATCATTTTATTCACCTGATTTGGGCAGAAGACAGCCTTTAGGTGAGGGATTGGAAAGCTGGCGTGGTTTCTACCAGAGTATTCGGCCTACACAGATGGGGCTATCACTGAACATTGATATGTCTTCCACTGCATTTATTGAGCCATTGCCAGTAATTGATTTCGTAACTCAACTGCTGAACAGAGATGTATCCGCCCGGCCACTTTCTGATGCTGATCGTGTGAAGATCAAGAAAGCTCTCCGGGGTATCAAAGTTGAAGTGACACATCGTGGAAACATGAGAAGAAAATATCGTATCTCTGGTCTGACTTCACAGGCAACCAGAGAATTGACATTCCCGGTAGATGAAAGGGGAACCATGAAATCTGTTGTGGAGTACTTCTATGAGACATATGGGTTTGTCATTCAACATACTCAGTGGCCTTGTCTGCAAGTTGGCAATGCACAGAGACCAAACTATTTGCCAATGGAGGTTTGCAAGATAGTGGAGGGTCAAAGGTACTCGAAAAGGCTTAATGAGAGGCAAATCACTAATTTGCTGAGAGTTACATGCCAGCGTCCTGGTGAGAGGGAGCGTGATATCATGCAGACAGTACACCACAACGCATACCACGAAGATCCTTATGCTAAAGAATTTGGAATCAAGATTAGCGAGAAACTTGCTCAAGTTGAAGCTCGCATCCTTCCTGCTCCATGGCTCAAATATCACGATACGGGCAGAGAAAAGGATTGTCTTCCTCAAGTTGGGCAATGGAATATGATGAATAAGAAAATGGTTAATGGGGGGACAGTTAACAACTGGTTCTGCATAAACTTTTCAAGGAATGTTCAAGATAGTGTTGCCCGTGGTTTTTGCTATGAACTTGCTCAGATGTGTTATATATCTGGAATGGCATTTACACCTGAGCCAGTAGTCCCCCCAGTCAGTGCTCGCCCTGATCAAGTGGAAAAGGTTCTTAAAACTCGGTATCATGATGCCAAGAACAAACTGCAAGGAAGAGAGCTTGATTTGCTCATCGTTATCTTGCCCGATAATAATGGATCTCTTTATGGTGATCTCAAACGGATATGTGAGACTGACCTAGGACTTGTTTCACAATGTTGCTTAACTAAGCATGTCTTCAAAATGAGCAAGCAGTACCTTGCAAATGTTGCTTTGAAAATTAATGTCAAAGTTGGAGGGAGAAACACTGTACTGGTTGATGCGCTCTCACGACGCATTCCCTTGGTCAGTGACAGACCTACAATTATTTTTGGAGCTGATGTGACTCATCCACATCCTGGAGAGGATTCAAGCCCATCAATTGCAGCAGTTGTGGCTTCGCAAGACTATCCTGAAATTACAAAGTATGCTGGTTTAGTTTGTGCCCAAGTTCATAGGCAGGAACTCATTCAGGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACAGTGACTGGTGGAATGATCAAGGAACTTCTTATATCTTTTAGGAGAGCTACAGGACAAAAGCCACAACGCATCATATTTTATAGGGATGGTGTGAGTGAGGGACAGTTTTATCAGGTTCTACTGTTTGAGCTTGATGCTATTCGAAAGGCATGTGCATCCCTGGAACCCAATTATCAGCCTCCTGTGACTTTTGTGGTGGTTCAAAAGCGTCACCACACAAGGCTCTTTGCTAGCAACCATCATGATAAGAGTTCTGTTGACAAGAGTGGCAACATATTGCCTGGCACTGTTGTTGACTCCAAAATCTGCCATCCCACCGAATTTGACTTTTATCTCTGCAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCTCACTACCATGTGTTGTGGGATGAAAACAATTTTACTGCTGATGCCTTGCAAACACTCACCAACAATCTTTGCTACACATATGCTCGGTGCACCCGGTCTGTTTCAATCGTGCCTCCTGCATACTATGCTCACCTTGCTGCATTCCGCGCAAGGTTTTACATGGAACCAGAGACGTCGGATAGTGGCTCTATGACAAGTGGTGCTGTTGCAGGCCGTGGGATGGGCGGTGTAGGGCGTAGCACGCGTGTACCTGGTGCCAATGCTGCTGTGAGACCATTGCCTGCACTCAAGGAGAACGTCAAGAGAGTTATGTTTTATTGTTAA 3162 0.4738 MVRKRRTELPSGGESSEAQHPSERSAPPPQQQAAAAAPGGAGPQGGRGWGPQGGRGGGRSRGMPQQQYGAPPDYQGRGRGGPSQQGGRGGYGSGRSGGGGGGMGSGRGVGPSYGGPSRPPAPELHQATSVQSYQTGVSSQPASSEASSSLPPEPIDLEQSMGQMVLHSEPAPTPPPASKSSMRFPLRPGKGSYGTKCVVKANHFFAELPNKDLHQYDVTITPEVISRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFMSKEFRIVLVDDDEGAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNAQRPNYLPMEVCKIVEGQRYSKRLNERQITNLLRVTCQRPGERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCINFSRNVQDSVARGFCYELAQMCYISGMAFTPEPVVPPVSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQVHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGVGRSTRVPGANAAVRPLPALKENVKRVMFYC 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01748 1053 Gene3D paz domain 385 510 - -
Gma16g01748 1053 CDD Piwi_ago-like 550 1000 IPR045246 -
Gma16g01748 1053 Gene3D - 570 743 - -
Gma16g01748 1053 Pfam Argonaute linker 2 domain 532 578 IPR032472 -
Gma16g01748 1053 Pfam N-terminal domain of argonaute 195 330 IPR032474 -
Gma16g01748 1053 ProSiteProfiles Piwi domain profile. 680 1001 IPR003165 GO:0003676
Gma16g01748 1053 Coils Coil 1053 1053 - -
Gma16g01748 1053 ProSiteProfiles PAZ domain profile. 392 506 IPR003100 GO:0005515
Gma16g01748 1053 SUPERFAMILY PAZ domain 198 543 IPR036085 GO:0005515
Gma16g01748 1053 SMART Piwi_a_2 680 1001 IPR003165 GO:0003676
Gma16g01748 1053 Pfam Mid domain of argonaute 589 664 IPR032473 -
Gma16g01748 1053 CDD PAZ_argonaute_like 391 505 - -
Gma16g01748 1053 SMART DUF1785_2 339 391 IPR014811 -
Gma16g01748 1053 SUPERFAMILY Ribonuclease H-like 666 1001 IPR012337 -
Gma16g01748 1053 Gene3D - 749 1053 IPR036397 GO:0003676
Gma16g01748 1053 MobiDBLite consensus disorder prediction 12 29 - -
Gma16g01748 1053 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 88 1052 - -
Gma16g01748 1053 MobiDBLite consensus disorder prediction 124 154 - -
Gma16g01748 1053 Pfam Argonaute linker 1 domain 340 390 IPR014811 -
Gma16g01748 1053 MobiDBLite consensus disorder prediction 1 187 - -
Gma16g01748 1053 Pfam Piwi domain 681 1000 IPR003165 GO:0003676
Gma16g01748 1053 Pfam PAZ domain 396 523 IPR003100 GO:0005515
Gma16g01748 1053 PANTHER PROTEIN ARGONAUTE 1A 88 1052 - -
Gma16g01748 1053 SMART PAZ_2_a_3 396 528 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01748 Gma-Chr16 38615035 38620351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01748 73 1053 Eukaryotic Initiation Factors Gene Family AT1G48410 81.155 0.0 1620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01748 K11593 - gmx:100778754 1943.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01748 16 38615035 38620351 Gma09g01573 09 40870344 40875738 GST