Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01715 ATGAGCTTGGCATTTAAGGTAAGTCTTTTGTGCGTGATCTTGTTTGTGTCATTCAAATTCAACATGGTCTTGTGTATTGAACTTGAGGAATACTATCCAGAAGAAAGAGATGCTTTGATGCTCATAAGGGATTCTTTGAATTCTTCTGTCAATTTGCATGGGAATTGGACAGGCCCTCCTTGTATAGACAATCGTAGTAGATGGATTGGTATCACTTGTTCAAATTGGCATGTTGTTCAAATTGTTCTTGAAGGAGTTGACCTTAGTGGTTATTTACCTCCCACATTCCTTCTAAACATAACTTTCTTGAGCCAACTTGACTTCAGAAACAATGCACTTTCTGGACCACTGCCAAGCCTCAAGAATTTGATGTTTTTGGAACAAGTCCTGTTATCATTCAATCACTTCTCAGGGTCAATTCCGGTGGAGTATGTTGAAATTCCTAGTCTACAAGTGTTGGAGCTGCAAGACAATTACTTAGAGGGTCAAATTCCACCCTTTGACCAATCATCATTGACAAGTTTCAATGTGTCATATAATCATCTGTCAGGGCCTATTCCTGAAACTTCTGTGCTGCAAAGGTTCCCAGAGAGTTCATATGGTAATAATTCAGATCTTTGTGGAGAGCCATTGGATAAGTTATGTCCTATTGAACCTCCTGCCCCATCTCCATCTCCATTCCCAGCACTGAAGCCAAATAAGAGGAGGTTTCAAGCATGGATTGTTGCTTTGATTGGTGGTGCAGCTGCACTGATTCTTCTTTCTCTGATCATTATTATTGCTTTCATGTTTCGTAAAAGACGTACAAATGGAAAAGAATCAATAAGAAATGATTCAACAGAGTATGTTTTTAGGGCATGGGCAAAGAAGATGGTGTCTTATGCTGGGAACAGTGATGTTTCTGGAAGATTAGGGAAATTGGAATTTTCCAACAAGAAATTGCCAGTTTTTGACTTGGATGATTTATTGAGGGCATCAGCAGAAGTGCTAGGAAGAGGGAACCTAGGCATTACATACAAAACAACACTTGAAACAGGAACTGTTGTTGCAGTGAAGAGACTTAACCACATGAATGAACTCAACAAAAAGGAATTTCTCCAGCAGATGCAATTGCTTGGCCAGATGAAGCATGAAAATCTAGTAGAAATAATCTCCTTTTATTATTCAGAGGACCAAAAGTTGATCATATATGAATTTATCTCTGATGGCACTTTGTGTGAACTCCTACATGAGGGTAGAGGAATTGGAAGAATACCACTTGATTGGACCACAAGACTTTCCATCATCAAGGACATAGCAAAGGGTCTTGTTTTCCTTCATGACTCTTTGCCTCAACACAAGGTCCCTCATGCCAACCTCAAATCATCGAATGTCCTAATCCATCAAGATAGTAAAGGTTACCATTCCAAGCTCACAGACTATGGTTTCTTGCCACTACTCTCAGCCAAACAGAATGCAGAAAAGCTAGCCATAAGGAGGTCTCCAGAATTTGTTAAAGGGAAGAAGCTGACACACAAAGCTGATGTCTATTGCTTTGGCATCATTATGCTAGAGATTATAACTGGCAGAATACCTGGTCATATCCTAGGTGAAATTGAAGAAACAACCAATGATCTTTCAGATTGGGTAAGAACTGTGGTGAACAATGATTGGTCCACAGATATATTGGATTTAGAAATACTAGCAGAGAAAGAAGGGCATGATGCAATGTTGAAGTTGACTGAGTTGGCTCTAGAGTGTACAGATATGACACCAGAGAAACGGCCAAAAATGAGTGTAGTATTGGCCAAAGATTTTGAGCTAGTCAAGCTTCTTCACATGGGGTACCCTCCACAAGCAAAGTTAGGCTTGGACACTTCTAAGAAGGGTGCAAGTGAGAGCTTTGCTGTGATGGCAACCCGTAGATATTCTTTTGGAAGGGCTGATGAGGCCACTCATCCAGACTCCATGAGGGCCACTTTGGCTGAATTTGCATCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTAGCCTTGCTTTGGTTAAGATTTACCAGGATTCAGCTTTCTCAGCTGGTGAATTGTTGGCAGTTGCACTTGCACATGCATTTGCTCTATTTGCTGCTGTTTCTTCTAGCATGCATGTATCAGGTGGCCATGTCAACCCAGCTGTGACATTTGGTGCTCTCATTGGAGGCAGGATTTCTGTGCTCCGTGCCGTATACTACTGGATTGCTCAAATTCTAGGTGCTATAGTGGCTGCCCTCGTGCTCAGACTTGTCACTAATAACATGAGACCATCAGGGTTCCACGTGGGGCAAGGTGTTGGAGTAGGACACATGCTTATACTTGAGATAATCATGACATTTGGGCTAATGTACACTGTGTATGGTACTGCAATTGATCCCAAAAGGGGTTCTGTTAGCAACATTGCACCTTTGGCAATTGGACTCATTGTTGGGGCAAACATCCTTGTTGGTGGGCCATTTGATGGAGCCTGCATGAACCCTGCTCTAGCTTTTGGGCCTTCCTTAGTGGGCTGGAGATGGCACCAACACTGGATCTTCTGGGTGGGTCCACTGATTGGGGCTGCACTGGCAGCACTGGTGTATGAATATGTTGTGATCCCAACTGAGCCCCCTCATCAACACCAACCTTTGGCTCCTGAAGATTACTAG 2658 0.4244 MSLAFKVSLLCVILFVSFKFNMVLCIELEEYYPEERDALMLIRDSLNSSVNLHGNWTGPPCIDNRSRWIGITCSNWHVVQIVLEGVDLSGYLPPTFLLNITFLSQLDFRNNALSGPLPSLKNLMFLEQVLLSFNHFSGSIPVEYVEIPSLQVLELQDNYLEGQIPPFDQSSLTSFNVSYNHLSGPIPETSVLQRFPESSYGNNSDLCGEPLDKLCPIEPPAPSPSPFPALKPNKRRFQAWIVALIGGAAALILLSLIIIIAFMFRKRRTNGKESIRNDSTEYVFRAWAKKMVSYAGNSDVSGRLGKLEFSNKKLPVFDLDDLLRASAEVLGRGNLGITYKTTLETGTVVAVKRLNHMNELNKKEFLQQMQLLGQMKHENLVEIISFYYSEDQKLIIYEFISDGTLCELLHEGRGIGRIPLDWTTRLSIIKDIAKGLVFLHDSLPQHKVPHANLKSSNVLIHQDSKGYHSKLTDYGFLPLLSAKQNAEKLAIRRSPEFVKGKKLTHKADVYCFGIIMLEIITGRIPGHILGEIEETTNDLSDWVRTVVNNDWSTDILDLEILAEKEGHDAMLKLTELALECTDMTPEKRPKMSVVLAKDFELVKLLHMGYPPQAKLGLDTSKKGASESFAVMATRRYSFGRADEATHPDSMRATLAEFASTFIFVFAGEGSSLALVKIYQDSAFSAGELLAVALAHAFALFAAVSSSMHVSGGHVNPAVTFGALIGGRISVLRAVYYWIAQILGAIVAALVLRLVTNNMRPSGFHVGQGVGVGHMLILEIIMTFGLMYTVYGTAIDPKRGSVSNIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHQHWIFWVGPLIGAALAALVYEYVVIPTEPPHQHQPLAPEDY 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01715 885 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Gma16g01715 885 Pfam Major intrinsic protein 644 864 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma16g01715 885 Gene3D Glycerol uptake facilitator protein. 635 876 IPR023271 -
Gma16g01715 885 TIGRFAM MIP: MIP family channel proteins 655 864 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma16g01715 885 Gene3D Ribonuclease Inhibitor 32 217 IPR032675 -
Gma16g01715 885 SUPERFAMILY L domain-like 32 195 - -
Gma16g01715 885 Gene3D Transferase(Phosphotransferase) domain 1 400 605 - -
Gma16g01715 885 PANTHER POLLEN RECEPTOR-LIKE KINASE 4 10 596 - -
Gma16g01715 885 ProSitePatterns MIP family signature. 713 721 IPR022357 -
Gma16g01715 885 SUPERFAMILY Protein kinase-like (PK-like) 328 596 IPR011009 -
Gma16g01715 885 PRINTS Major intrinsic protein family signature 651 670 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma16g01715 885 PRINTS Major intrinsic protein family signature 777 795 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma16g01715 885 PRINTS Major intrinsic protein family signature 732 751 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma16g01715 885 PRINTS Major intrinsic protein family signature 695 719 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma16g01715 885 PRINTS Major intrinsic protein family signature 847 867 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma16g01715 885 PRINTS Major intrinsic protein family signature 810 832 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma16g01715 885 SUPERFAMILY Aquaporin-like 643 875 IPR023271 -
Gma16g01715 885 Pfam Protein kinase domain 328 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01715 885 CDD MIP 651 867 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma16g01715 885 Gene3D Phosphorylase Kinase; domain 1 293 399 - -
Gma16g01715 885 ProSiteProfiles Protein kinase domain profile. 324 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01715 885 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01715 Gma-Chr16 38100219 38106351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01715 629 885 Major Intrinsic Protein MIP AT1G73190 71.161 1.05e-117 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gma16g01715 Pkinase 2.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01715 - - gmx:102668068 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01715 16 38100219 38106351 Gma16g01715 16 38100219 38106351 ECH
Gma16g01715 16 38100219 38106351 Gma09g01533 09 40214632 40216779 GST