Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01709 ATGAGAAACTCTGAAGCACCAACACATGGTGGCATGGAGATAGAAGCAACAAGGCCTTCAGCTGGGAATGGTTCAACAATAACCCTACCAGGGTTGAGTCCTCTGAGTGAGACCCTTTGGAGGGAAAAGGCCAACACTGCAGAGATCATTGGTGATGTCTCAGCAAGGCTCACATGGAAGGATCTGACTGTGATGGTCACTCTCAGCAACGGTGAGACACAGAATGTTTTGGAGGGTCTAACTGGTTATGCTGAACCAGGAACCTTCACTGCTCTCATGGGACCCTCTGGCTCAGGAAAATCTACTCTCCTCGATGCACTTTCTAGTCGTTTAGCTGCAAATGCCTTCCTCTCAGGCACCATTCTCCTCAATGGTCGCAAAGCAAAACTCTCTTTTGGCACTGCTGCCTATGTGACACAAGATGACAACTTGATTGGTACCCTAACGGTGAGAGAAACGATATCATATTCAGCCCGTTTGCGTTTGCCGGATAACATGCCATGGGCAGATAAACGTGCTTTGGTTGAGAGCACCATAGTGGCAATGGGGCTCCAAGATTGTGCTGACACAGTGATTGGAAATTGGCACTTGCGTGGGATCAGTGGTGGGGAGAAGAGAAGGGTTAGCATTGCCTTAGAAATCTTGATGAGGCCAAGGTTGCTTTTCCTTGATGAACCAACCAGTGGACTTGACAGTGCTTCAGCTTTCTTTGTGACGCAGACACTACGTGCCTTGGCAAGGGATGGAAGAACCGTGATAGCCTCTATTCATCAGCCAAGCAGTGAAGTGTTTGAGCTATTTGACCAATTATACTTGCTCTCTAGTGGCAAAACTGTTTATTTTGGGCAAGCTTCCGAGGCATATGAGTTCTTTGCACAAGCTGGCTTTCCATGTCCTGCTTTGAGGAACCCTTCTGATCACTTCCTCAGGTGCATCAATTCTGACTTTGACAAAGTCAAGGCCACTCTTAAAGGGTCCATGAAACTCAGGTTTGAGGGAAGTGATGATCCTTTGGACAGGATCACTACTGCTGAAGCTATCAGAACTCTTATTGACTTCTACCGCACTTCTCAGCACTCTTATGCTGCAAGACAGAAAGTGGATGAGATATCCAAAGTTAAGGGAACAGTGCTTGAAGCTGGAGGAAGTGAGGCTAGTTTTCTGATGCAGTCTTACACCTTAACCAAACGTTCCTTCATCAACATGTCAAGGGACTTTGGATACTACTGGCTTAGGCTTGTTATCTACATTGTAGTCACTGTTTGTATTGGAACCATTTATTTGAATGTGGGAACAGGCTACAACTCTATTCTGGCTAGAGGTTCTTGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGCCACTATGGTGTCACTTCATTTGTCATCAGCAACACATTATCTGCAATGCCCTTCCTGATTTTGATCACCTTTCTCTCTGGAACCATTTGTTACTTCATGGTTCGCCTACACCCTGGCTTCTGGCACTACCTCTTCTTTGTGTTGTGCCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCTAGCATTGTCCCCAACTTCCTCATGGGCATCATTATTGGAGCAGGAATTCAGGGCATATTCATGTTGGTCTCAGGCTATTTTAGGCTCCCACATGATATCCCAAAGCCAGTCTGGCGCTACCCAATGTCATACATCAGTTTCCACTTCTGGGCACTACAGGGTCAGTACCAGAACGATTTGCGCGGTTTGATATTCGACAACCAGACACCAGACCTTCCAAAGATACCGGGTGAATACATCTTGGAAAAAGTGTTCCAAATTGATGTCAACAGATCAAAGTGGATAAACTTGAGTGTGATCTTCAGCATGATTGTGATCTATCGCATCATTTTCTTCATCATGATCAAAGTCAACGAGGACGTGACACCGTGGATCAGAGGGTACCTTGCTAGGAGGAGAATGCAGCAGAAGAGTGGAGCACAGAACACAACTATCGCACCTGATGTTCTCACTCAGTCACCATCTCTCAGAACCTATGTTTCCACTCAAACAAAATGA 2121 0.4564 MRNSEAPTHGGMEIEATRPSAGNGSTITLPGLSPLSETLWREKANTAEIIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDNMPWADKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDRITTAEAIRTLIDFYRTSQHSYAARQKVDEISKVKGTVLEAGGSEASFLMQSYTLTKRSFINMSRDFGYYWLRLVIYIVVTVCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTSFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQTPDLPKIPGEYILEKVFQIDVNRSKWINLSVIFSMIVIYRIIFFIMIKVNEDVTPWIRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRTYVSTQTK 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01709 706 SMART AAA_5 86 257 IPR003593 -
Gma16g01709 706 ProSitePatterns ABC transporters family signature. 200 214 IPR017871 GO:0005524
Gma16g01709 706 Gene3D - 51 295 IPR027417 -
Gma16g01709 706 Pfam ABC-2 type transporter 257 313 IPR043926 GO:0140359
Gma16g01709 706 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 9 702 - -
Gma16g01709 706 CDD ABCG_EPDR 54 282 - -
Gma16g01709 706 Pfam ABC-2 type transporter 390 596 IPR013525 GO:0016020|GO:0140359
Gma16g01709 706 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 57 300 IPR003439 GO:0005524
Gma16g01709 706 MobiDBLite consensus disorder prediction 1 28 - -
Gma16g01709 706 PANTHER OS04G0528300 PROTEIN 9 702 - -
Gma16g01709 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 294 IPR027417 -
Gma16g01709 706 Pfam ABC transporter 79 228 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01709 Gma-Chr16 38046671 38052078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01709 87 288 Calmodulin-binding Proteins AT2G36910 32.394 4.40e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01709 K05681 - gmx:100803731 1387.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01709 16 38046671 38052078 Gma16g01709 16 38046671 38052078 ECH
Gma16g01709 16 38046671 38052078 Gma09g01527 09 40131502 40137744 GST