Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01687 ATGGCTGTGTCACTGTGGAGAAGTCGCACTGCTTCATCTGCACTGAACTTGTTCACCAATGCTCTTCGCCATTTCTCTTCCGAGGCAACAAACTCCAGTCCTCATAGTACACGAGAGAGTATGATGTATTCTGATATAAACTCACGAATTGGGAGTTGCATGCCATTGTCTGCAATGCGCATTGGAACAATCATTCACAACATTGAGTTGAATCCAGGGCAAGGTGGCAAGCTCGTCCGAGCTGCTGGAACTAGTGCAAAGATCTTGAAAGAGCCCACATCAGCATACTGTTTAATCCAACTGCCCTCAGGTGTTAAAAAGTTGATTGATTCTCGATGTAGGGCCACTGTTGGTGTTGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAAGGCTGGACACAGCCGATGGCTTGGTCGAAGGCCAGTTGTCCGAGGAGTGGCAATGAATCCAGTAGATCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTGGTGGACGATTTGGGCGAGGATCTCTCACTCCTTGGGGCAAGCCAACTAAGAGTGGCTACAAGACTGGACCCCTGAAGCGCAGAAGATTTTCCCTCTATGCGACCAAACCTGAAACAACAATGCTACTCCGCTTCCATAGAAGAGCCTCCACCACTCGTTTACACCCCTTCGTCACATCACTTTCCAATACACACCCTTTCTCCACCTCTCCACCATCCATTTCTGACGCCGCAGCCCGAACCCGCCTCTTGAACTCCATCCGCACCCTCCAATCCGCCGACGCCGCCGTCTCCGTCTCCGTCGACTTCTTCCACCGAATGCTAACCCTAAACCCCTTTCCCTGCATCCAAGACTTCAACCTCTTGTTCGGCATCGTCGCGAAATCGCAGCACTTCGCCACCGCCATTTCCCTAATCAAAACCCTTCATTCTCTCGGTTATGAAATTGCTGACGTGTGCACCCTCAACATTCTCATCAATTGCCTCTGCCGCCTGCGCAAAACGACGCTGGGGTTCGCCGTTTTGGGTCTCATGACCAAAATCGGCTTGGAACCCACGCTGGTGACACTTAACACCATTGCTAACGGTCTCTGCATTGTATCGCTGCAATGCTCGAACGTATGGGGCGTTGGTTAA 1134 0.5123 MAVSLWRSRTASSALNLFTNALRHFSSEATNSSPHSTRESMMYSDINSRIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQLPSGVKKLIDSRCRATVGVVSNPSHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSGGRFGRGSLTPWGKPTKSGYKTGPLKRRRFSLYATKPETTMLLRFHRRASTTRLHPFVTSLSNTHPFSTSPPSISDAAARTRLLNSIRTLQSADAAVSVSVDFFHRMLTLNPFPCIQDFNLLFGIVAKSQHFATAISLIKTLHSLGYEIADVCTLNILINCLCRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLCIVSLQCSNVWGVG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01687 377 Gene3D - 44 120 IPR014722 -
Gma16g01687 377 Pfam PPR repeat family 317 364 IPR002885 -
Gma16g01687 377 ProSitePatterns Ribosomal protein L2 signature. 143 154 IPR022671 GO:0003735|GO:0005840|GO:0006412
Gma16g01687 377 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 207 367 - -
Gma16g01687 377 SMART Ribosomal_L2_C_2 48 181 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gma16g01687 377 TIGRFAM PPR: pentatricopeptide repeat domain 320 352 IPR002885 -
Gma16g01687 377 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 207 367 - -
Gma16g01687 377 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Gma16g01687 377 Gene3D Ribosomal protein L2, domain 3 121 202 IPR014726 -
Gma16g01687 377 Gene3D Tetratricopeptide repeat domain 233 371 IPR011990 GO:0005515
Gma16g01687 377 TIGRFAM rplB_bact: ribosomal protein uL2 44 193 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Gma16g01687 377 MobiDBLite consensus disorder prediction 149 187 - -
Gma16g01687 377 SUPERFAMILY Translation proteins SH3-like domain 50 187 IPR008991 -
Gma16g01687 377 Pfam Ribosomal Proteins L2, C-terminal domain 50 179 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01687 Gma-Chr16 37848339 37851134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01687 47 160 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 43.333 9.30e-22 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01687 - - gmx:100792418 381.333