Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01652 ATGGCTTCCTTCAAGATTCTCTTCCTCTTCATCCTTCTTAGCTTCCTCAATTTTGCAACTACTGAGGCACAGGATCAAAGCTCCACCCCTGTCGAGTTATCCCATGCCTGCTACGTTGGCAACTCTATCGCTAGCAGTGCCTTCCAAATAAACGTTAGGACCCTCCTCTCTTCCTTATCAACAAACGCCCCCGGCGACAACGGATTCTACAACACCACAGTCCCTGCACTAAACCCTTCTGACTCTGTCTTTGGACTCTTCATGTGCAGGGGTGACGTTCCTCCTCAGCTTTGTCAACAATGCGTCCAATATGCAACCCATATACTACGCTCACAGTGCTCACTGTCCATTGAACCTGTGATTTGGTACGATGAGTGCACGGTTCGTTATTCCAACCGCTCCTTCTTCTCCACCGTGGACACTAGGCCTGCACTTGCCTTCACGAACGCTACAAATATCTCAAACCAGGAAAGTTTCATGCGTTCAATGTTTTCTGTAATGAACATAACTGCAGATGATGCTGCTGCGGATGACAAGAAGTTTGCCACGAGGCAAAAAACCATATCTGAATTTCAGAGCCTTTATTGTCTTGCTCAGTGCACTCCAGATTTGTCACTCCTTGATTGCAGAAGCTGTCTCAGTAAAGTTATAGGAGACCTTTCATGGTGCTGTGAAGGAAAGCAGGGAGCGAGTGTTCTATACCCCAGTTGTAATATTAGGTATGAATTGTACCCTTTCTACCGCTCCACAAATACAACTATACCACCAGCGTGGGTTCCTGCAACAAATTTTCCCGATCAGGATTCACAAATTTCAGAAGATCCAACTTATCTAAACCACAGTTGCCCAACCAATGTAACTGCTGACAGCACTTTCCAAATTTATCTCAGTAACCTTCTCTCTTACTTAGCTTCCAATGCCACAAATGGGAAGAAATATTACAAGGACAACGTAGAAACTGTGTATGGCCTCTTCATGTGCCGAGGCGATCTTCCCTCTCAACTCTGCCAACAATGCGTCCTCAACGCAACCCACCGAATATCCTCAGTTTGCAATTCACTTCAAGAGGGAATCATTTGGTACAGCCACTGCATGCTTCGATATTCCAATCGGAATTTCTTCTCAGAAGTGGAAGAAAGTCCAAATTTTGACATGCTGAATCTTACCAGTTCCTCCACCAGCATCATCCCCGGGCAAGACTACTTCACTTTTACATTATCAGATACCATAGTTAAGCTGGCCAAAGACGCAGGGGATGCCGCTGACAAATACGTTACCAAATCATTAAAATTGACTGGTTCGCAAACTCTGTATACTCTTGTTCAATGCACGCAGGATTTGTCTAGTGAGGGTTGTCGGACCTGTCTGAAAGATATAAATGGAAAAATTCCATGGTTCCGCTTGGGAAGCGTAGGGGGAAGAGTTCTATATCCGAGCTGCAATCTCAGGTTTGAATTGTTCCCATTTTACAGGGGTAGAGGTGAAGAAACTCCGTCGCCAATGCCGGGTAATCCTTCTACACCAGGCCTTCAAGGTAAAAGAAAAGTCCGATTGCGAACAATAATTTTCATTATTGTACCCACAATTGTTTCTGTGACGCTCTTTTTTCTTGGCTATTATTTGGTAAAGAGAAAAGCAAGAAAGAGTCTTAAAAGTATTCTTAGAGACAATTTTGGTGATGAAAGTGTCACTTTAGAGCCATTGCAATTTAGTTTGGCTGTAATTGAAGCAGCAACCAACAACTTTTCAAATGATAATAGGATTGGCAAAGGCGGGTTTGGAGAAGTTTACAAGGGCATTCTTTTTGATGGACGACAAATAGCTGTAAAAAGACTCTCAAAAAGTTCTAAGCAAGGCGCAAATGAGTTTAAGAATGAGGTTTTATTAATAGCCAAACTTCAACACAGAAATCTTGTGACATTCATCGGATTTTGTCTTGAAGAACTTGAAAAAATACTTATCTACGAATATGTGCCAAACAAGAGTCTTGATTATTTTTTATTTGCAGATCCTCAACGagcaaagatgttaagttggtttgaacgctataacattataggaggaattgcccgaggaacttattacttgcatgaattatctcgactcaaaatcatacaccgtgatctcaaacctagtaatgttttattagatgaaaatatgattccaaaaatttcagattttggtttggctagaattgttgaaataaatcaagaccaaggaagtacaaatagaattgttggaacatatggttatatgtctccagaatatgcaatgcttggacaattttcagaaaaatcagatgtttttagttttggagtgatggttctagagattatttcaggaaaaaagaatttaggcttatatgaaccacatcgtgttgctgatggcctcttgagttgtgtttggagacaatggagggatcaaacacccttaagcatactagacgcaaATCTAGTAATGAGTGTTAGTCTTAATGATTGTATCAAACTTGAAAAGCTTTAA 2502 0.3505 MASFKILFLFILLSFLNFATTEAQDQSSTPVELSHACYVGNSIASSAFQINVRTLLSSLSTNAPGDNGFYNTTVPALNPSDSVFGLFMCRGDVPPQLCQQCVQYATHILRSQCSLSIEPVIWYDECTVRYSNRSFFSTVDTRPALAFTNATNISNQESFMRSMFSVMNITADDAAADDKKFATRQKTISEFQSLYCLAQCTPDLSLLDCRSCLSKVIGDLSWCCEGKQGASVLYPSCNIRYELYPFYRSTNTTIPPAWVPATNFPDQDSQISEDPTYLNHSCPTNVTADSTFQIYLSNLLSYLASNATNGKKYYKDNVETVYGLFMCRGDLPSQLCQQCVLNATHRISSVCNSLQEGIIWYSHCMLRYSNRNFFSEVEESPNFDMLNLTSSSTSIIPGQDYFTFTLSDTIVKLAKDAGDAADKYVTKSLKLTGSQTLYTLVQCTQDLSSEGCRTCLKDINGKIPWFRLGSVGGRVLYPSCNLRFELFPFYRGRGEETPSPMPGNPSTPGLQGKRKVRLRTIIFIIVPTIVSVTLFFLGYYLVKRKARKSLKSILRDNFGDESVTLEPLQFSLAVIEAATNNFSNDNRIGKGGFGEVYKGILFDGRQIAVKRLSKSSKQGANEFKNEVLLIAKLQHRNLVTFIGFCLEELEKILIYEYVPNKSLDYFLFADPQRAKMLSWFERYNIIGGIARGTYYLHELSRLKIIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDQGSTNRIVGTYGYMSPEYAMLGQFSEKSDVFSFGVMVLEIISGKKNLGLYEPHRVADGLLSCVWRQWRDQTPLSILDANLVMSVSLNDCIKLEKL 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01652 833 ProSiteProfiles Gnk2-homologous domain profile. 383 489 IPR002902 -
Gma16g01652 833 Pfam Protein kinase domain 583 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01652 833 ProSiteProfiles Gnk2-homologous domain profile. 30 135 IPR002902 -
Gma16g01652 833 ProSiteProfiles Protein kinase domain profile. 582 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01652 833 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 267 494 - -
Gma16g01652 833 SMART serkin_6 582 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01652 833 ProSiteProfiles Gnk2-homologous domain profile. 274 373 IPR002902 -
Gma16g01652 833 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 508 829 - -
Gma16g01652 833 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 18 258 - -
Gma16g01652 833 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Gma16g01652 833 SUPERFAMILY Protein kinase-like (PK-like) 562 806 IPR011009 -
Gma16g01652 833 Gene3D - 31 135 IPR038408 -
Gma16g01652 833 Gene3D - 276 373 IPR038408 -
Gma16g01652 833 Gene3D - 385 489 IPR038408 -
Gma16g01652 833 Gene3D - 142 246 IPR038408 -
Gma16g01652 833 ProSitePatterns Protein kinases ATP-binding region signature. 588 610 IPR017441 GO:0005524
Gma16g01652 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672|GO:0006468
Gma16g01652 833 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 258 - -
Gma16g01652 833 Gene3D Transferase(Phosphotransferase) domain 1 658 833 - -
Gma16g01652 833 Gene3D Phosphorylase Kinase; domain 1 544 657 - -
Gma16g01652 833 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 508 829 - -
Gma16g01652 833 Pfam Salt stress response/antifungal 41 132 IPR002902 -
Gma16g01652 833 Pfam Salt stress response/antifungal 284 370 IPR002902 -
Gma16g01652 833 Pfam Salt stress response/antifungal 151 244 IPR002902 -
Gma16g01652 833 Pfam Salt stress response/antifungal 402 485 IPR002902 -
Gma16g01652 833 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 267 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01652 Gma-Chr16 37499207 37523601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01652 271 829 Receptor kinase-like Gene Family AT4G05200 43.945 1.29e-156 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma16g01652 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01652 - - gmx:100795776 1533.08