Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01647 ATGCTTCCTTTGCAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGTCCCCACCACCAGCAACACAAAATCTCCGAAGATCTAATTCTGGATGATTATGCTTCTCTGAATGTCAATGATTCTAACCAAAAATTCATCACTAGTAGCAGCAGCCAACCAACAAAGAAACTTTTCTATGGGGCAAATAAAAAGAATCATGACTCAAACGAACATAAGAAGAAGATGATTCATATGGAGATTGAAAGGAAAAGGAGACAAGAAATGGCTACCTTCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGCGAATTACATAAAGCACATGCAGAACAATATCAAAGAACTTGGTGCCAAGAGAGATGAAATGAAGAAACTCTCCAATCATTGCAATAATATGGAAAATAACCATGCGGGCTTGCATACATCTTGCAACTTTACTATCCATGAGAATAATGGTATTATGGGAATCGAAATCACCAGTGGCTTCAGAGAGGAAAAGCCTAAAATTTCAAAGTTACTACAGTTTTTGACTGAAGAAGGATTTGAAGTTGTTAGTTGCTTTTCAACAGAAGTCAATGGCAGATTGCTCCACAGTGTGCAGTGTGAGGTTAACAATTCCAACAGCGTAGATCTATCTGAGCTGCGAAAGAAAGTTTCCAATGCATTTCCAACATTTAGATGTTCTGATTAA 741 0.3873 MLPLQRGNELVIQFSNSPHHQQHKISEDLILDDYASLNVNDSNQKFITSSSSQPTKKLFYGANKKNHDSNEHKKKMIHMEIERKRRQEMATFYASLRSLLPLEFIKGKRSISDHMNEAANYIKHMQNNIKELGAKRDEMKKLSNHCNNMENNHAGLHTSCNFTIHENNGIMGIEITSGFREEKPKISKLLQFLTEEGFEVVSCFSTEVNGRLLHSVQCEVNNSNSVDLSELRKKVSNAFPTFRCSD 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01647 246 CDD bHLH_AtORG2_like 74 145 - -
Gma16g01647 246 Coils Coil 115 152 - -
Gma16g01647 246 SMART finulus 79 131 IPR011598 GO:0046983
Gma16g01647 246 Pfam Helix-loop-helix DNA-binding domain 75 126 IPR011598 GO:0046983
Gma16g01647 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Gma16g01647 246 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 244 IPR015660 GO:0003700|GO:0006357
Gma16g01647 246 Gene3D - 64 160 IPR036638 GO:0046983
Gma16g01647 246 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 244 - -
Gma16g01647 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 144 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01647 Gma-Chr16 37460537 37461667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01647 68 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 41.714 1.28e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma16g01647 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01647 - - gmx:100780888 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01647 16 37460537 37461667 Gma09g01439 09 38734399 38736309 GST
Gma16g01647 16 37460537 37461667 Gma10g02285 10 50457781 50459564 PCT
Gma16g01647 16 37460537 37461667 Gma20g01430 20 41420525 41422065 PCT
Gma10g02285 10 50457781 50459564 Gma16g01647 16 37460537 37461667 PCT
Gma20g01430 20 41420525 41422065 Gma16g01647 16 37460537 37461667 PCT