Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01646 ATGGCAAGGAGAAATAGTGGCAAACACTTGCTTGTTGGGGAGAAAGAAGATTATAATAAGCTTGCCATGGATGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAATCTCTGCACCACCCTTAGATCGCTTCTTCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATCATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAGTAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGATGAGTAATATTTGTCCTGAGAATATTGAAAGCTCTAGTACTATTCATCTTCCACCCTTGGTTTCTATTCATCCTTTCCCCGGAGGACTTGAGATTATGTGCAGTTACAGCTTTGGGAAAAGTTTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGCTTAACGTGGTTAGCACTACTTCAATCAGAAGAGATGGCAGATTCATACACACTATACGATCAGAGTATCCAATTCATTCGAATATGGCTGGCACTGATTACACTGAATTGCAAATGAAGCTTATGGAGATAATATCATCTTCAAGAATATAG 618 0.39 MARRNSGKHLLVGEKEDYNKLAMDDENKKWMHKETERQRRQEMGNLCTTLRSLLPLEYIKGKRSTSDHVNEAMNYINHLQSKVKQLQAKRDELVKVSNLMSNICPENIESSSTIHLPPLVSIHPFPGGLEIMCSYSFGKSLFPMSRVLDILLKEGLNVVSTTSIRRDGRFIHTIRSEYPIHSNMAGTDYTELQMKLMEIISSSRI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01646 205 PANTHER TRANSCRIPTION FACTOR 1 203 - -
Gma16g01646 205 CDD bHLH_AtORG2_like 28 98 - -
Gma16g01646 205 Gene3D - 19 104 IPR036638 GO:0046983
Gma16g01646 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 27 79 IPR011598 GO:0046983
Gma16g01646 205 SMART finulus 33 85 IPR011598 GO:0046983
Gma16g01646 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 96 IPR036638 GO:0046983
Gma16g01646 205 Coils Coil 69 96 - -
Gma16g01646 205 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 203 IPR015660 GO:0003700|GO:0006357
Gma16g01646 205 Pfam Helix-loop-helix DNA-binding domain 29 80 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01646 Gma-Chr16 37443602 37444974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01646 32 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 41.176 3.69e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma16g01646 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01646 - - gsj:114390355 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01646 16 37443602 37444974 Gma09g01438 09 38702737 38704494 GST
Gma16g01646 16 37443602 37444974 Gma10g02284 10 50440229 50441741 PCT
Gma16g01646 16 37443602 37444974 Gma20g01431 20 41428053 41428616 PCT
Gma10g02284 10 50440229 50441741 Gma16g01646 16 37443602 37444974 PCT
Gma20g01431 20 41428053 41428616 Gma16g01646 16 37443602 37444974 PCT