Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01645 ATGCACTTGAAACAATACTGTTGTTTCCTCAAAGATGAAAGGCAAAGCAAAATACAGGTTGCCAACAAGAAGAACAATAGGGACTATCCATGGGAAATGTACACGTTGAAGGAGTTGCTTCGTGCAACAAACAACTTTGATCAAGATAATAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTTTGGTCGAACAAGTAAAGGCATTGCAGTGAAGCGGTTGAAGACAATGACTGCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAAAATTTGTTGGGATTGAGGGGATTCTATGCAGGAGGAGATGAAAGGTTGATTGTGTATGATTACATGCCTAACCATAGCTTGCTCACCCATTTGCATGGTCCACTTGCTAAGAAATGTCAGCTAGATTGGCCTAGAAGAATGAGCATAGCAATTGGAACTGCTGAAGGTTTAGCGTATCTGCACCATGAATCAACTCCTCACATCATACACAGAgatattaaggcaagcaatgttcttctagacgctgaatttcaagccaaggttgctgattttggttttgcaaagctgatTATTAGTGCCAAGAAACCAATTGAGAAATTCCCTGGAGAAGTGAAAAGGGACATTGTTCAATGGGTCACACCATATATCAACAAAGGCCTCTTCAACAACATTGCTGATCCAAAGTTGAAGGGGAAATTTGATTTGGAGCAATTGAAAAACGTTACCACCATAGCTCTTAGATGCACCGATAGTAGTGCGGATAAGAGGCCTAGCATGAAAGAGGTGGTGGATTGGCTCAAGAATGGTGTAGGGAACACTTAA 837 0.3775 MHLKQYCCFLKDERQSKIQVANKKNNRDYPWEMYTLKELLRATNNFDQDNKIGEGGFGSVYFGRTSKGIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKKCQLDWPRRMSIAIGTAEGLAYLHHESTPHIIHRDIKASNVLLDAEFQAKVADFGFAKLIISAKKPIEKFPGEVKRDIVQWVTPYINKGLFNNIADPKLKGKFDLEQLKNVTTIALRCTDSSADKRPSMKEVVDWLKNGVGNT 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01645 278 PANTHER - 3 195 - -
Gma16g01645 278 PANTHER - 195 276 - -
Gma16g01645 278 PIRSF ILK 231 275 - -
Gma16g01645 278 PIRSF ILK 11 231 - -
Gma16g01645 278 SMART serkin_6 46 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01645 278 SUPERFAMILY Protein kinase-like (PK-like) 27 273 IPR011009 -
Gma16g01645 278 PANTHER OS01G0750732 PROTEIN 3 195 - -
Gma16g01645 278 PANTHER OS01G0750732 PROTEIN 195 276 - -
Gma16g01645 278 Pfam Protein kinase domain 47 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01645 278 Gene3D Transferase(Phosphotransferase) domain 1 200 276 - -
Gma16g01645 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Gma16g01645 278 ProSitePatterns Protein kinases ATP-binding region signature. 52 72 IPR017441 GO:0005524
Gma16g01645 278 ProSiteProfiles Protein kinase domain profile. 46 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01645 278 Gene3D Phosphorylase Kinase; domain 1 6 119 - -
Gma16g01645 278 Gene3D Transferase(Phosphotransferase) domain 1 120 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01645 Gma-Chr16 37433194 37435624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01645 35 272 Receptor kinase-like Gene Family AT4G02010 36.458 5.71e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gma16g01645 Pkinase 6.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01645 - - gmx:100793659 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01645 16 37433194 37435624 Gma09g01437 09 38671448 38673558 GST
Gma16g01645 16 37433194 37435624 Gma10g02283 10 50429500 50431505 PCT
Gma16g01645 16 37433194 37435624 Gma20g01432 20 41438173 41439829 PCT
Gma10g02283 10 50429500 50431505 Gma16g01645 16 37433194 37435624 PCT
Gma20g01432 20 41438173 41439829 Gma16g01645 16 37433194 37435624 PCT