Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01640 ATGGGAAGAGGAAGGGTTGTTCtggagagaatagagaacaagatcaaccgtcaagtaacattctcaaaacgcagaagtgggttgctgaagaaggcctttgagctttctgtgctatgtgacgctgaagttgcccttatcatcttttcTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGATATTAACAAAATCATTGAGAGGTATCGCCAATGTCGTTACAGCAAGTCGCAGACTGACGATTCATTGGAACACGATTCACAGAGTTCATACCATGAATTCTTGAAATTAAGAGCGAAATATGAATCACTTGAGCTGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTAGCTTTAAAGATTTGCAGAGCCTTGAGAAACAACTAGACATAACGCTCGCACTAACTCGACAGCATCAAACGAAGAAACTCTTGGCACGAGCAGATGAATTACGCGAAAAGgttcacaagttggaggatcttaacaaacAATTAGAGTCCAAGGAAAAAGATGAATTCTCAAGCTTCATCCTTGACAATAACAATTACATTCAAGTGCATGCTACACAAGGTGATCAATTTGAGTCTGGGACAACACTAAACACATGTAGGTTTCAACGCCAAGATTCAAAGGAAAAAGCAATTGATACCAAGACAGACGGTAGTCAAAGCAGTCACAACAAAAACAAAGGATGGCTATTGTGA 711 0.3179 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYSKSQTDDSLEHDSQSSYHEFLKLRAKYESLELTQRHFQGEELEPLSFKDLQSLEKQLDITLALTRQHQTKKLLARADELREKVHKLEDLNKQLESKEKDEFSSFILDNNNYIQVHATQGDQFESGTTLNTCRFQRQDSKEKAIDTKTDGSQSSHNKNKGWLL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01640 236 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Gma16g01640 236 MobiDBLite consensus disorder prediction 222 236 - -
Gma16g01640 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma16g01640 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 235 - -
Gma16g01640 236 PANTHER MADS BOX PROTEIN 1 235 - -
Gma16g01640 236 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma16g01640 236 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Gma16g01640 236 Coils Coil 143 173 - -
Gma16g01640 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma16g01640 236 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gma16g01640 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma16g01640 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma16g01640 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma16g01640 236 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma16g01640 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma16g01640 236 MobiDBLite consensus disorder prediction 211 236 - -
Gma16g01640 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01640 Gma-Chr16 37336189 37343500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01640 1 178 MADS-box Gene Family AT2G45650 55.056 2.28e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma16g01640 K-box 7.5e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01640 16 37336189 37343500 Gma16g01640 16 37336189 37343500 ECH
Gma16g01640 16 37336189 37343500 Gma09g01428 09 38483862 38493811 GST
Gma10g02280 10 50381735 50386248 Gma16g01640 16 37336189 37343500 PCT