Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01625 atgtatACCTTGAACCACTCTTCATATTTGTACCATGTTTCCCCTGAGCTCTCCTCTTCCTTGGACTCGTCCTCGCCGGCTTCCGAGGGCTCTCGCGGCGTGGCATTTTCCGACGAGGAGGTGCGGCTGGCGGTGAGGCACCCGAAGAAGCGGGCCGGGCGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTACCGGGGCGTGAGGAGGAGGAACACGGATAAGTGGGTAAGTGAGGTGAGGGAGCCCAACAAAAAGACCAGGATTTGGCTGGGGACTTTTCCCACGCCGGAGATGGCGGCACGGGCCCACGACGTGGCGGCAATGGCCCTGAGGGGCCGGTATGCCTGTCTCAACTTCGCTGACTCGACGTGGCGGTTACCAATTCCCGCCACTGCTAACGCAAAGGATATACAGAAAGCAGCAGCAGAGGCTGCCGAGGCTTTCAGACCAAGTCAGACCTTAGAAAATACGAATACAAAGCAAGAGTGTGTAAAAGTGGTGACGACAACAACGATCACAGAACAAAAACGAGGAATGTTTTATACGGAGGAAGAAGAGCAAGTGTTAGATATGCCTGAGTTGCTTAGGAATATGGTGCTTATGTCCCCAACACATTGCATAGGGTATGAGTATGAAGATGCTGACTTGGATGCTCAAGATGCTGAGGTGTCCCTATGGAGTTTCTCAATTTAA 696 0.5359 MYTLNHSSYLYHVSPELSSSLDSSSPASEGSRGVAFSDEEVRLAVRHPKKRAGRKKFRETRHPVYRGVRRRNTDKWVSEVREPNKKTRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSTWRLPIPATANAKDIQKAAAEAAEAFRPSQTLENTNTKQECVKVVTTTTITEQKRGMFYTEEEEQVLDMPELLRNMVLMSPTHCIGYEYEDADLDAQDAEVSLWSFSI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01625 231 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Gma16g01625 231 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Gma16g01625 231 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Gma16g01625 231 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 231 - -
Gma16g01625 231 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gma16g01625 231 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gma16g01625 231 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 231 IPR045277 GO:0003700
Gma16g01625 231 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Gma16g01625 231 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Gma16g01625 231 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01625 Gma-Chr16 37197625 37198766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01625 10 229 AP2-EREBP Transcription Factor Family AT5G51990 51.965 3.19e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma16g01625 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01625 - - gmx:100819565 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01625 16 37197625 37198766 Gma09g01413 09 38194831 38196070 GST
Gma16g01625 16 37197625 37198766 Gma10g02266 10 50254896 50255869 PCT
Gma16g01625 16 37197625 37198766 Gma20g01450 20 41629902 41631058 PCT
Gma10g02266 10 50254896 50255869 Gma16g01625 16 37197625 37198766 PCT
Gma20g01450 20 41629902 41631058 Gma16g01625 16 37197625 37198766 PCT