Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01624 atgacacatgagagagttgatatcatcagtgttttggttgtggatgacgataaaacttctttggccattgttagcaatatactcacctcattaggatacaaagTTCTCACTGCCAACAGTGCCCTAAATGCTTTGGAGATTCTTAGAGAGTTCAGAGGCTTTATTGATCTCCTCATTACAGAACTTCATATATCTGGGATGAATGGATTTGAATTTCAAAAGTATGTTGAAAATCAATTCCACTTACCCGTGATAATTATGTCTTCAGATGGAAGAAATAGTGTAATTTCCAAGAGTTTAGCAAATGGTGCCGCACACTATATTTTGAAACCCTTTTCTGCAGATGACTTCAAAGACATTTGGCAGTATGCAAGGAAACTAACTTTTCAAAATATTGAAGGGGGGTCAATACCAGGTGATAACACTTCTATTCAGGATGTTCACTCTGCAATATCATCGAATGTGAGCAAGAGAAAAAGGAAGTGTTTCCCAAGAAAGAGTACCCAAATGAATAAGGAAGGCCAAAGTGGAGAAAGCTCTACGCTTGTAAAGAAACCAAAGGTTGTTTGGACACCATATCTTCACAACCGCTTTCTGCTTGCCATAAAACAAATTGGATTGGAGAAGGCTGTTCCAAAGACAATTCTTCAAGTCATGAATGTGCCAAACTTGACAAGAGAAAATGTTGCCAGTCACTTACAGAAGTATCGCATATTCCTGCGAAAAGTAGCAGATAAAGGATTGCTTGAGGGCTTATCTAACAGGGATCTAAGGTCAAGGTTTGCCTATGGCCTTTCAGCATCAATGATCAAAGACATCCAAGCAAAAACTGCGAAGTCGCGTGTTACTGCGCAGCAATATATGAAAAGAATAGCACATCAATCAGTGTATGGAGGAATAGCCAATGCTGTTAAATCTTACAACCATGTTTCAAGTGTGACTAATACTCCACTTGGAAGAAGCCATCAATTTCCCCATCCATATCACAAAGGCTTGAATATGATGCTTCACAACCAACATGGTAGTTCTTCGGATCAAGCAAGGCTTAGAGCACAATCAAGCTTTGGAAGCAATGTTGGGACCAATAATATCCAGCAAAATACGTTGGGAAGCTATGCAAACCAACCATATTATGCACAAAGCTCTTACAACAATGTTGGTGTTGTCTTTCCTTCAGATGGAGTAACGAGACATGGCTTGATGACTTCCACAAATGGCCTAAGAGGAGGTGTGAACTATGGTGGCAACCAATTGATGTATCCAAACTATGCTTCATTGGGAAATCAACACAAGTTTAGCTGTGGTCAAGGAAACTGGAACATTGGATCTTTGAATTACAACAGGAGCTTTGGCTTGATCAATGAGACGAGTGAAAATGTGAATAAGAATGTGTTAAGTTTTGGGCAAGGAAATTTTGATTTGGCTCAAGGAGGGTTTGCTTCTACTTCTAGTGCTGGGGAGTGTTGGTCAAAGGAGCTTCCAGCAGAAAATATTCAAGGAAACCCAACACTGCATCAACAACTACAAGGCAATTTTGCAGAAAATGATATTGGTACTTCCATTGGTGAGGGCAATGTCAACCTCCTGGACGAAGATGACTTTTCTAATCTTTTCATGATGCTAGATGAAATGGATCTTCTTAATGAGACTGAAGAGAACCATAATGCAAATGACTTCTTGAAGTCTGACTTTTCAAGCTCTAATCACGCTGTGCAGTCCCTTGAACAGTCTTACAAAGCTCTGACAAATTACCAAGCTACTACTGATGTGATTATTAACCCAACTAAAGGCACATCAAATCTGCCAAACGAGACCTCAACAAGCTCTGACAAGAATTCTAACCGATTAATGGGAGGTGATGATGGATATGCAAACATGGAACACTTGAACAGGTTCATGATGAATGATGATGTCTCCTCAGGAAGTAACTCGGCTACTGATCAGGCAAGTCAACATACTAAATATTCTTCATGTTATTGA 1980 0.3773 MTHERVDIISVLVVDDDKTSLAIVSNILTSLGYKVLTANSALNALEILREFRGFIDLLITELHISGMNGFEFQKYVENQFHLPVIIMSSDGRNSVISKSLANGAAHYILKPFSADDFKDIWQYARKLTFQNIEGGSIPGDNTSIQDVHSAISSNVSKRKRKCFPRKSTQMNKEGQSGESSTLVKKPKVVWTPYLHNRFLLAIKQIGLEKAVPKTILQVMNVPNLTRENVASHLQKYRIFLRKVADKGLLEGLSNRDLRSRFAYGLSASMIKDIQAKTAKSRVTAQQYMKRIAHQSVYGGIANAVKSYNHVSSVTNTPLGRSHQFPHPYHKGLNMMLHNQHGSSSDQARLRAQSSFGSNVGTNNIQQNTLGSYANQPYYAQSSYNNVGVVFPSDGVTRHGLMTSTNGLRGGVNYGGNQLMYPNYASLGNQHKFSCGQGNWNIGSLNYNRSFGLINETSENVNKNVLSFGQGNFDLAQGGFASTSSAGECWSKELPAENIQGNPTLHQQLQGNFAENDIGTSIGEGNVNLLDEDDFSNLFMMLDEMDLLNETEENHNANDFLKSDFSSSNHAVQSLEQSYKALTNYQATTDVIINPTKGTSNLPNETSTSSDKNSNRLMGGDDGYANMEHLNRFMMNDDVSSGSNSATDQASQHTKYSSCY 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01624 659 PANTHER RESPONSE REGULATOR 23-RELATED 9 553 - -
Gma16g01624 659 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 553 IPR045279 GO:0009736
Gma16g01624 659 MobiDBLite consensus disorder prediction 593 615 - -
Gma16g01624 659 Pfam Response regulator receiver domain 11 119 IPR001789 GO:0000160
Gma16g01624 659 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 185 238 IPR006447 GO:0003677
Gma16g01624 659 SMART REC_2 9 121 IPR001789 GO:0000160
Gma16g01624 659 Pfam Myb-like DNA-binding domain 188 237 IPR001005 -
Gma16g01624 659 MobiDBLite consensus disorder prediction 593 622 - -
Gma16g01624 659 ProSiteProfiles Response regulatory domain profile. 10 125 IPR001789 GO:0000160
Gma16g01624 659 SUPERFAMILY Homeodomain-like 183 242 IPR009057 -
Gma16g01624 659 CDD REC_typeB_ARR-like 11 124 - -
Gma16g01624 659 Gene3D - 181 244 - -
Gma16g01624 659 MobiDBLite consensus disorder prediction 635 659 - -
Gma16g01624 659 Gene3D - 10 154 - -
Gma16g01624 659 SUPERFAMILY CheY-like 10 126 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01624 Gma-Chr16 37169623 37175909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01624 9 248 Response Regulator Gene Family AT4G31920 38.525 3.24e-47 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma16g01624 Response_reg 4.5e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01624 - K14491 gmx:102663776 1191.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01624 16 37169623 37175909 Gma16g01624 16 37169623 37175909 ECH