Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01620 ATGACACCTTTGCGAGTGGCAGGTGGATTAACCCAATCATCATCAAATTCTGGAATTTTCTATCAAGGAGATGGGCAGTCACAGAATGTAGTTAACTCTCACTTAAGCTCATCTTTTGTTAACTCGTCTAGCACGGTTTCTGGAGCTTCTCGTTCAAACCTGGGTCCGGTTTCTGGGGATATGAATAATGCAGTTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTAGGAGCCAGCTCTTTAGTTACAGATGCAAATTCTGCACTCTCTGGTGGCCCACATTTGCAGAGAAGTGCCAGCGTTAACACAGACTCATACTTACGATTACCTGCCTCACCTATGTCATTTACATCAAATAATATCAGTATTTCTGGATCATCAGTGATGGATGTTTCCTCTGTAGTACAACAGAGCTCTCATCAAGATCAGAATGTTCAACAATTGCAGCAGAATCAGCAGCAGCCACAGGGTGCTTCAAGTGCTATGTCTTTGTCTGCATCTCAAACTGGCCCTTCTATGCTCCAAATGGGTGCACAAATCCCAGGATCTTTCATTCAAGATCCAAATAATATGTCTCATCTGTCAAAGAAACCTAGAATGGATATCAAACAGGAAGATATGATGCAGCAGCAGGTTATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTCCAGGGTCGTAATCCCCAGTTACAGGCTTTCCTTcagcagcagcagcagagactgagacaacaacaaatgtttcagcaaatgccacaattacaccgagcacacttgcagcagcagcaacaacaacaacaaatgcaattgaggcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcaacagcaagtgatgcagccctcttctgtggtcaagcgtccatatgacagtagtgttagtggGGTATGTGCCCGTCGATTGATGCAGTATCTCTATCATCAAAGGCAACGACCAAATGATAATAGTATTGCCTATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCATTATATAGTAATGTTGGGCATCACGCACTTGGTGTTTTTCCCCAAGCATCTATGGATGCATGGCACTGTGACATATGTGGTTCTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTAATTGATGAACTATTGTTTCTGGACATGCCACGTGAAATGAGATTCGCTTCTGGTGCGATGATGTTAGAATATGGAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGTGTTGTTCGTGAAGGTCAACTTCGTATCATATTCACTCAAGACTTGAAGATATTATCTTGGGAGTTCTGTGCAAGGTGCCATGAGGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGGTCAACCAGTTAGTTCAGGTAGCTAAAAAATGTCAAAGTACAATTGCTGAAAGTGGTTCTGATGGGGTTTCTCAACAAGACATCCAAACAAACAGCAACATGTTGTTGACAGCTGGGGGTCAGCTTGCGAAGATTTTGGAGATGCAATCGCTAAATGAGTTGGGCTTTTCTAAAAGATACGTGAGATGTTTGCAAATTTCGGAGGTTGTCAATAGCATGAAAGACCTAATAGATATCTGTGCAGATCACAAAATTGGTGCCATTGAGAGTTTGAAAAATTTTCCTCGTCTAGCAACAGCCTCAAAGGTCCAGATGCAGAAGATGCAGGAAATGGAACAGCTAGCAAATGTTCAAGGTCTGCCAACTGATCGAAACACACTCAATAAGCTAATGGCACTGAATCCTGGATTGAACAACCATATAAACAACCCTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCAAGCTGCTTTAGCACTGAACAACTACCAAAATCTTCTCATGAGGCAAAATTCAATGAACTCTAGCCCTGGCTCACTTCAGCGCGAAGGGTCCTCTTTCAATAATTCAAACCAGAGTCCATCTTCAGCTTTGCAAGGAGCTGGTCCTGCTTTAATTCCAGGCCCAATGCAGAATTCATCTGTTAGTGGTTTCCCAAGCCCCCGTCTACCCCCACAGCAGCAGCAACACCACCTACAACAGCCCTCATTAAGTGCAAATGCTTTACTGCAACAAAATCATTCACAGGGTTCCCAAGGAAATCAAGCTCTGCAGCAGCAGATGATCCATCAACTACTGCAGGAGATGTCAAATAACAACGGGGGAGTGCAACCACAGTCTCTTGGTGGACCCAGTGCAAATATGGCAAAGAATGCACTGGGGTTTGGGGGCCATTATCCATCCTTAAGTGGAGGTTCTGCCAATGTTACAGGAAACAATGGACCTATGTCAAGGAATAATAGCTTCAAAACAACTGCAAATAGTGATTCTTCTGCTGCTGGTGGCAACAATGGATTAAACCAGAGAACATCTGAGATGCCACAAAATCTACATTTGCAAGATGTGGTTCAGGATATTGGCAATGAATTCACGGATAATCCCTTCCTTAACAGTGATCTTGATGATAACATGGGTTTTGGCTGGAAGGCATGA 2640 0.389 MTPLRVAGGLTQSSSNSGIFYQGDGQSQNVVNSHLSSSFVNSSSTVSGASRSNLGPVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVMDVSSVVQQSSHQDQNVQQLQQNQQQPQGASSAMSLSASQTGPSMLQMGAQIPGSFIQDPNNMSHLSKKPRMDIKQEDMMQQQVIQQILQRQDSMQFQGRNPQLQAFLQQQQQRLRQQQMFQQMPQLHRAHLQQQQQQQQMQLRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVMQPSSVVKRPYDSSVSGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYSNVGHHALGVFPQASMDAWHCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDMPREMRFASGAMMLEYGKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARCHEELLPRRLVAPQVNQLVQVAKKCQSTIAESGSDGVSQQDIQTNSNMLLTAGGQLAKILEMQSLNELGFSKRYVRCLQISEVVNSMKDLIDICADHKIGAIESLKNFPRLATASKVQMQKMQEMEQLANVQGLPTDRNTLNKLMALNPGLNNHINNPHNMVNRGALSGSAQAALALNNYQNLLMRQNSMNSSPGSLQREGSSFNNSNQSPSSALQGAGPALIPGPMQNSSVSGFPSPRLPPQQQQHHLQQPSLSANALLQQNHSQGSQGNQALQQQMIHQLLQEMSNNNGGVQPQSLGGPSANMAKNALGFGGHYPSLSGGSANVTGNNGPMSRNNSFKTTANSDSSAAGGNNGLNQRTSEMPQNLHLQDVVQDIGNEFTDNPFLNSDLDDNMGFGWKA 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01620 879 MobiDBLite consensus disorder prediction 132 176 - -
Gma16g01620 879 MobiDBLite consensus disorder prediction 132 195 - -
Gma16g01620 879 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 151 - -
Gma16g01620 879 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 267 878 - -
Gma16g01620 879 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 162 281 - -
Gma16g01620 879 MobiDBLite consensus disorder prediction 705 731 - -
Gma16g01620 879 MobiDBLite consensus disorder prediction 666 695 - -
Gma16g01620 879 Pfam LIM-domain binding protein 325 585 IPR029005 -
Gma16g01620 879 MobiDBLite consensus disorder prediction 804 844 - -
Gma16g01620 879 MobiDBLite consensus disorder prediction 666 731 - -
Gma16g01620 879 PANTHER LIM DOMAIN-BINDING PROTEIN 162 281 IPR029005 -
Gma16g01620 879 PANTHER LIM DOMAIN-BINDING PROTEIN 5 151 IPR029005 -
Gma16g01620 879 PANTHER LIM DOMAIN-BINDING PROTEIN 267 878 IPR029005 -
Gma16g01620 879 Coils Coil 257 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01620 Gma-Chr16 37074473 37080317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01620 320 589 C2H2 Transcription Factor Family AT1G43850 59.630 2.06e-107 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01620 - - gmx:547529 1415.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01620 16 37074473 37080317 Gma16g01620 16 37074473 37080317 ECH
Gma16g01620 16 37074473 37080317 Gma09g01402 09 37862411 37867984 GST