Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01610 ATGGCTAGTTTTTTCACTGTGGAGCCACCTCTTTTTTCTTCACCCTTTAATATTTCAAAGCAAAATCCCTCTACCTTGAATTTATCTGTTCAAAGGAGAATGGAAGGCCATAGCGAGATGGGTCTAATGGGAGAAAGTTTTGATACTAGTAATTTGCTAGGGAGGATGAGGGATGACGAATATGAAAGCCGGTCCGGAAGTGATAATTTTGATGGCGGATCTGGTGATGATCAAGATGCTGGGGATGATCAGCCACATAAAAAGAAGAAGAAATACCATAGGCACACCCCTCAACAAATTCAGGAGCTTGAAGCGTTTTTCAAGGAGTGTCCTCATCCCGACGAGAAGCAAAGAACAGATCTTAGCAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACccaaatgaagACACAACTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAATGACAAGCTCCGAGCTGAGAACAGTGTAATGAAGGATGCTTTGGCAAATCCGATATGTAACAACTGTGGTGGCCCAGCTATTCCTGGTCAAATTTCATTGGAGGAGCACCAAACTAGAATGGAAAATGCCCGACTGAAGGATGAATTGAACCGAATATGTGCATTGGCAAACAAGTTCCTGGGCCGGCCCCTCTCACCACTGGCCAGTCCCATGGCTCTGCCACCCTCAAATTCTGGTCTAGAACTTGCTATTGGAAGAAACGGACTTGGTGGTTCAAGCAATTTTGGCATGCCCTTGCCAATGGGATTTGATGTGGGAGATGGAGCTTTGGGCTCCTCTCCTGCGATGTCTACTATGGGTGCTAGATCACCAATGGGAATGATGGGAAACGAAATCCAGCTTGAGAGATCCATGCTTTTAGACCTTGCACTGAGTGCTATGAATGAATTAATTAAGATGGCTCAGCCTGATACCTCTCTTTGGATTAAAAGCTCTGATGGCAGGAATGAAGTACTGAACCATGATGAGTATGCAAGACTGTTTTCTCCTTATATTGGATCAAAACCTGCTGCTGGTTATGTGACTGAAGCTACAAGAGGAACTGGAGTAGTATCAGCCAGCAGTTTGGGCCTTGTTGAAATATTGATGGATGCGGATCAATGGTCGGAGATGTTTTCATCTATGATTGCTAGTGCTGCCACTGTGGAAGTACTATCTAGTGGCACGGGTGGAACCAGAAGTGGAGCGTTGCAAGTGATGCTTGCTGAGGTTCAATTGCTTTCTCCACTAGTCCCTGCTCGTCAAGTGAGTTTCCTCAGGTTTTGCAAGAAGCACGCTGAAGGTTTATGGGCTGTGGTTGATGTTTCAGTTGACATTGGTCGTAATGTTACCAATTCACATCCATTAATGAGCTGCAGGAGGCTTCCCTCGGGCTGTGTTATTCAGGACATGCCCAATGGTTTTTCCAATATTACTTGGGTTGAACATTCCCAATATGATGAGAGTGTCATCCACCAACTTTATCGCCCATTGGTTAGTTCTGGCATTGGTTTTGGTGCTCAGAGATGGATTGCCACCCTCCTAAGGCAGTGTGACTGCTTGGCAATCCTCAGGTCTCCTCAAGGCCCATCTGAGGACCCCACAGCCCAAGCGGGTAGGACAAACATGATGAAGCTCGCACAACGCATGACCGAGTGCTTCTGCTCAGGGATCTGTGCTTCATCTGCTTGCAAGTGGGACATACTGCACATTGGTAATCTGGCTGATGACATGAGAATCATGGCCCGGAAAATCGATGACCCAACTGAGGCTCCTGGCATTGTGCTGAGTGCTTCAACTTCTGTTTGGATGCCGGTGTCACGGAAAAGGGTGTTTGATTTTCTGCGTGATGAAAATTTGAGAGGTGAGTGGGACCTGCTGTCCAAAGATGGACCAATGAAGGAGATGCTCCATATTGCTAAAGGACAAGACCGTGGAAATTGTGTTTCCATCCTTCATTCTGCTAATAGCGAGTGCAATGTGCTATATCTGCAAGAGTCATGGAGTGATGCCTCTGGCTCGATGGTAGTGTATTCCCCGATCAACATGCAAGCCTTGCAGATGGTGATGAGCTGTGGAGATTCATCATTTGTCCCTCTCCGTCCATCAGGCTTTGCTATTCTGCCAGATGGCACTTCAAACAACGGTGATGGCAGTGACGGTGGTGGCAGCTGCTTGCTTACAGTTGGGTTACAAATGTTGCCAAATGGCAACCACCAATCAGCCAAGTTCACAATGGAGTCAGTTGATGCTGTCAATAACCTGATCTCATTTACCATTCAGAAGGTCAAAGATGCACTTGGAGTTGCATGA 2328 0.4635 MASFFTVEPPLFSSPFNISKQNPSTLNLSVQRRMEGHSEMGLMGESFDTSNLLGRMRDDEYESRSGSDNFDGGSGDDQDAGDDQPHKKKKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENDKLRAENSVMKDALANPICNNCGGPAIPGQISLEEHQTRMENARLKDELNRICALANKFLGRPLSPLASPMALPPSNSGLELAIGRNGLGGSSNFGMPLPMGFDVGDGALGSSPAMSTMGARSPMGMMGNEIQLERSMLLDLALSAMNELIKMAQPDTSLWIKSSDGRNEVLNHDEYARLFSPYIGSKPAAGYVTEATRGTGVVSASSLGLVEILMDADQWSEMFSSMIASAATVEVLSSGTGGTRSGALQVMLAEVQLLSPLVPARQVSFLRFCKKHAEGLWAVVDVSVDIGRNVTNSHPLMSCRRLPSGCVIQDMPNGFSNITWVEHSQYDESVIHQLYRPLVSSGIGFGAQRWIATLLRQCDCLAILRSPQGPSEDPTAQAGRTNMMKLAQRMTECFCSGICASSACKWDILHIGNLADDMRIMARKIDDPTEAPGIVLSASTSVWMPVSRKRVFDFLRDENLRGEWDLLSKDGPMKEMLHIAKGQDRGNCVSILHSANSECNVLYLQESWSDASGSMVVYSPINMQALQMVMSCGDSSFVPLRPSGFAILPDGTSNNGDGSDGGGSCLLTVGLQMLPNGNHQSAKFTMESVDAVNNLISFTIQKVKDALGVA 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01610 775 SUPERFAMILY Bet v1-like 543 747 - -
Gma16g01610 775 SUPERFAMILY Homeodomain-like 69 146 IPR009057 -
Gma16g01610 775 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 773 IPR042160 -
Gma16g01610 775 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Gma16g01610 775 SMART START_1 300 525 IPR002913 GO:0008289
Gma16g01610 775 Gene3D - 76 162 - -
Gma16g01610 775 SMART HOX_1 88 150 IPR001356 GO:0003677
Gma16g01610 775 MobiDBLite consensus disorder prediction 60 96 - -
Gma16g01610 775 Pfam Homeodomain 89 144 IPR001356 GO:0003677
Gma16g01610 775 Gene3D - 300 511 IPR023393 -
Gma16g01610 775 CDD homeodomain 93 146 IPR001356 GO:0003677
Gma16g01610 775 Pfam START domain 301 524 IPR002913 GO:0008289
Gma16g01610 775 SUPERFAMILY Bet v1-like 293 525 - -
Gma16g01610 775 ProSiteProfiles START domain profile. 291 528 IPR002913 GO:0008289
Gma16g01610 775 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 30 773 - -
Gma16g01610 775 CDD START_ArGLABRA2_like 295 523 - -
Gma16g01610 775 Coils Coil 140 167 - -
Gma16g01610 775 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01610 Gma-Chr16 36965442 36970698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01610 3 772 Homeobox Transcription Factor Family AT3G61150 51.945 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma16g01610 START 5.3e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01610 K09338 - gmx:100784656 1505.35