Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01599 ATGCTTGAATTTAATGCATTCCACTTTCACCTCACTCACATCATTTTCTCCCTCATTTTCAACCTTTCTAAAGCACAATCCTCCATGGAGCCAGTTCCCGCCTACATCACCCACCACAGCTGGGAGCCTTCCGTCGCCATCACCGTCGCCGCCATCATCTTCGCCCTCCTCCTCATGGCTATCATCTCAGTCTACCTCCGCCGTTGCGCCCAGTCTCACATCATCATCACCACCACCACCTTACCCTGCTCCTGCTCCCAGGGGATCAACAAGGACCTCCTCAACACGTTCCCAACGCTCTTTTACTCCAACATCAAGGACCTCAATAAGGCCAACCAAACGCTCGAATGCGCCGTCTGTCTAACGGATTTCACTCACAAAGACTCGCTTAGGCTGCTGCCCAAATGCAATCACGTGTTCCACCCTCATTGCATTGATTCCTGGCTGACATCTCACGTGACATGTCCCGTTTGTCGCGCGAATCTCAGCCAGGAATCATCATGCCATGTTTCCATAACCGTCCCTCCTCATGGCGAGGAGGGAAGTTTGGGAAACATGACGACGACGACAACAACAACAGAAGCCACCCAAGTTGAGCAAAGGCCAAGCAATGACATCAACCAggattgtgttggagatcccacatcaactagtgatactaccaaaataatatatataagcgaggaacaacattcgtctagtgagctagcttgtgaggttgagttaggttcaaagacgaatgttaggaATTCTACTATCACTAATATTGGTGATGGGGTTGTTGCGTCGGAGAGAAACCTTTCGAGGTCGAACTCGACGGGGCATTCCCTTGTGGAGGAGCAAGGGAAGGGTGTGGAGAGGTACACGTTGAGGTTGCCCGAAGATGTGAGGAGGTACATTCTAGTGAACCATGGAAGAACTGTTCAACGTTCCGCGAGTGTTAAGGGGGGGTGTTGGAGTGACAGCGAAGAGAGTTACGTGGGGAAGAGGGTGGAGAAGAGGTGGGTGATCTGCACGCCGCCATTTGTGGCGCAACATGGTTGA 1044 0.4607 MLEFNAFHFHLTHIIFSLIFNLSKAQSSMEPVPAYITHHSWEPSVAITVAAIIFALLLMAIISVYLRRCAQSHIIITTTTLPCSCSQGINKDLLNTFPTLFYSNIKDLNKANQTLECAVCLTDFTHKDSLRLLPKCNHVFHPHCIDSWLTSHVTCPVCRANLSQESSCHVSITVPPHGEEGSLGNMTTTTTTTEATQVEQRPSNDINQDCVGDPTSTSDTTKIIYISEEQHSSSELACEVELGSKTNVRNSTITNIGDGVVASERNLSRSNSTGHSLVEEQGKGVERYTLRLPEDVRRYILVNHGRTVQRSASVKGGCWSDSEESYVGKRVEKRWVICTPPFVAQHG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01599 347 SUPERFAMILY RING/U-box 96 164 - -
Gma16g01599 347 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Gma16g01599 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 166 IPR013083 -
Gma16g01599 347 MobiDBLite consensus disorder prediction 194 215 - -
Gma16g01599 347 CDD RING-H2_EL5_like 116 159 - -
Gma16g01599 347 Pfam Ring finger domain 116 159 IPR001841 -
Gma16g01599 347 SMART ring_2 117 158 IPR001841 -
Gma16g01599 347 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 323 - -
Gma16g01599 347 PANTHER RING FINGER DOMAIN-CONTAINING 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01599 Gma-Chr16 36821636 36823065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01599 14 301 Rapid Response to Elicitors AT3G05200 33.553 1.81e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01599 K10664 - gmx:100809056 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01599 16 36821636 36823065 Gma09g01353 09 36486187 36487960 GST