Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01594 ATGGGCGTGAAGAATCTGTGGGACGTCCTCGAATCGTGCAAGAAAACGGTTCCCCTTCACCACCTACAGAACAAGAGGGTGTGCGTGGACCTGTCGTGCTGGATGGTGCAGCTTCACAGCGTGAGCAAGTCGCACGCCTGCGTCAAGGAGAAAGTCTATCTCAGAGGACTCTTTCACCGTCTCAGAGCACTCATTGCGCTCAATTGCAGCCTCATCTTCGTCTCAGATGGAGCTATTCCTGCCATCAAATTATCAACCTATAGGCGTCGCTTAAATGTTGGAAAGGAGGTAGCACAAAATGAAACTAACTTACAGAAAGCGACTTCATTACAGAGAAACATGGGGTCTGAGTTTTCTTGCATGATCAAAGAGGCTAAGGTCTTGGGGATGGCTCTTGGCATTTCTTGTTTAAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAATTTTGAATCATTATGCGATGGGTGTTTCAGTTCAGATTCAGACATATTCCTTTTTGGTGCAAGGACACTATATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGACAGATATTGAAAGAAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTCTCCTTGCTTCTTGGCAGTGACTATTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCTTGTCAGATAGTCAAATCAATTGGAGACAAATATATTCTTAAGAAATTTGCTTCTGAAGGACTTGGATGGGTCAAAAAAAGAAAAGGAGGTAAGAATGATTTACGGCCGGATGATAACATTTTACAAGTAATTAATGCTTATATGAAGCCAAAATGTCACCAAGCAGATTCAGATATTGTGCACAAGGCTCTTGCTCAATATCCATTTCAACGTACTAAACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTACGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCTTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACAGAAGAAACAAAATATTCAGAAAAGAAAACCAAAGAAAAAGGAAACTAATTCATCTGTGGCAGAGCTTGATCTAAAACTTCAGAATTTGTTGCTTGATATTAATTTGAGAGACGAAGCCAACTTCAATGCGTCTGATTCTTCAGGAAGGATATCAAGAATTACAACTGATATGGCTGAAGCTGATCTGAATACCACAGACTTGTTGCCCCTATCACATGACATAGAACACACTGGGTTAATTCAGAATACTAGCAGTGAGGTGGTTTCCAGTATAGATAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACCTAAGAAATCCAATTTATCCTCAAAATGTCAGCAATCAAGTGACCAACATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGACATGTCCGTTGAACACAAGCAGAAAGCGAAGGAGCTGAGATTGTTCTTAGCTAGTATTAGGAATGAAATTCATTGA 1707 0.4071 MGVKNLWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLRGLFHRLRALIALNCSLIFVSDGAIPAIKLSTYRRRLNVGKEVAQNETNLQKATSLQRNMGSEFSCMIKEAKVLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTLYRDICLGDGGYVVCYEMTDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKYILKKFASEGLGWVKKRKGGKNDLRPDDNILQVINAYMKPKCHQADSDIVHKALAQYPFQRTKLQQICVGFFEWPSEKTDGYILPNIAERNLRRFANLRLTSSEVGLNLPLHEIPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLETSIVPADLIESACREKILEFEERKAQQKKQNIQKRKPKKKETNSSVAELDLKLQNLLLDINLRDEANFNASDSSGRISRITTDMAEADLNTTDLLPLSHDIEHTGLIQNTSSEVVSSIDKNEIIDLLSPSPPKKSNLSSKCQQSSDQHIEVINLSDSENDMSVEHKQKAKELRLFLASIRNEIH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01594 568 Gene3D - 2 199 - -
Gma16g01594 568 CDD PIN_GEN1 2 198 - -
Gma16g01594 568 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Gma16g01594 568 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 467 IPR006084 -
Gma16g01594 568 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Gma16g01594 568 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Gma16g01594 568 CDD CD_CSD 358 406 - -
Gma16g01594 568 MobiDBLite consensus disorder prediction 410 429 - -
Gma16g01594 568 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Gma16g01594 568 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Gma16g01594 568 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Gma16g01594 568 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Gma16g01594 568 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Gma16g01594 568 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Gma16g01594 568 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Gma16g01594 568 Gene3D - 201 257 - -
Gma16g01594 568 SMART xpgineu 130 200 IPR006086 GO:0004518
Gma16g01594 568 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Gma16g01594 568 SMART xpgn3 1 97 IPR006085 GO:0004518
Gma16g01594 568 Gene3D - 355 423 - -
Gma16g01594 568 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01594 Gma-Chr16 36763507 36770459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01594 1 236 Core DNA Replication Machinery Family AT5G26680 24.419 1.40e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01594 K15338 - gmx:100806919 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01594 16 36763507 36770459 Gma16g01594 16 36763507 36770459 ECH