Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01571 ATGTCAGAATCCAAGGAAGAAAATCCTGACCTTCTTCTCAAGTCAAAGGCACAGGAGGAACATGGGTTTGTCATGGATTTTGGCATTGGCCTGGAAAGTCTGTGGCCCTTGGATCATATATCTTTGGTCTCTAACCCCATGCCTCCTTTTCTCTTTTCCACTATCTCTGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGCTGAAGATGAGAGGCAAATCAGGATTGCAGCTTCAGGTAATACAAATACAACAACTGAAAATCCAATTGAAAATGATGACAACAAAAAAACTGTGCCACCCCTTGTAGCCATGACAGCTTCAGAAAATCCAGATGGTTATTGTCTGATCAAGGAAAGAATGACACAAGCGCTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAATCGGTATGCACTTACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGCTTCCCTGATGTATATGTTCTCTGTGGATGGAGAGAATGATGAGATCCTGGGACTTCCCGGCCGAGTTTTTCAGCATAAAATTCCAGAATGGACTCCCAATGTTCAGTTTTATTCTAGTAAAGAGTATCAGCGCCTAAATCACGCTCAACATTACAATGTCCGCGGAACCTTGGCCCTGCCTGTGTTTGAGCTTGCAGGACAGTCATGTGTGGCTGTAGTGGAGCTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCAGTAAAGTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAATCAGATTTGTAATGAATACCGTCAGTACGCATTAGCCGAGATTTTGGAGATACTGACAGCTGTGTGTGAAACTCATAGTTTGCCTCTGGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGTGGCGGTCTTAAGAAAATTTGCTCAAGTTTTAATGGTTGTTGCATGGGGCAAGTTTGCATGTCTATAACTGAGGTAGCATTCTATGTAATAGATGCTCATAAATGGGGTTTCCATGAGGCCTGTGTTGAGCATCACCTACAACAAGGTCAAGGAGTTGCTGGGAGGGCATTTTTGTCCCACAACATGTGCTTCTGTGGAAACAATACCCAGTTCTGCAAAACCGAATATCCCTTAGTACATTATGCTCTCATGTTTCATTTAAACAGCTGTTTTGCAGTATGCTTACAAAGCTCTCATACAGGAAATGATGATTATGTACTAGAGTTTTTTCTGCCTCCTGGGATCACTGACTTTAATGAACAAAAAAGATTGCTGGGATCCATATTGGCAACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGGGAATGCTTCAATTGAAATTATAGACGCAAGAAATGAAAGAGTTCATTTGAGATTTGAGTCCATTCCAATTACACAATCTTCTAAGTCACCACCTAGACATACCTCACCAAATATGGGGGAGGGGCTGCCACTGGAGCCATCAGAACCGAAAATAATGGCATACTTTGATGGTATAAATGATGGAGGGAGTCTTGGTGATAATGCAGGCGGACACATTGATCAGAACACTTCCTTAGAGATCAAAACCAAAAAGAAACCCTCAGATAGAAAACGTGGAAAAGCTGAGATATCAATTAGTCTTAATGTTTTGCAACATTACTTCACAGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATAAAAAAGGTTAACCATTCCCTGTCCAAGCTCAAGTGTGTTATTGAATCGGTCCATGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTAAGTACTGGTTCACTTCCCATTGCTGCTGGTTCCTTTTCTGACCCTTTCACTTCAAACAAGTTCCACCGCCAAACCACCTTGACCATTAGGCCATCAGAACCTAAGATCAACGAAAATGATTTTGATGCTTCTGGAGCATCAGAAACAAAAAGACAGGTTGCGATGGAAGATCAATTCCTTGGACTTGAAGCAAGGACACGAAGTCCTGAGAAAGTGATTAATAATAAAGGAGTGTCCATTCAGGAGATTGGCACTAAAGGCACAAACAAGTTTAGAACTGGGAGTGGCTCAAGTGGCAGTGGAAATCCTACTCATGCTTCATGCCATGGTAGTCCCCCAAATGAAATCTCACCTCCAAAAGATACATTTGTAACAGGCAACAGTGAGCAATGTCTTGTGTTAAGAGGATCACTGGGGTCAACAACACTGCACTCAACTAGTACACCAAACCGTGCAACTGCATACCCTATGCTTCACATTGTGGAAACAACAGAACCTCAAGAACCATTTGGAGGACAGCTACTTGAGGTTGCTGGTAGTTCTAAAGACTTGAGAAATCTATGCCCTTCAGCAGATGCTGTTTTGGAGGATCAGGTTCCAGAAGCTTACAAGATGAATCCTGAATGTTCTGATTTGCCTCAAATGCAACACATGGATACCCTTAATAAAACTATGACACCTTTTGCAGTTAGAAAAGAGGTGAACAGTGTGACCATTAAGGCAACATATAAAGAAGATATCATCAGGTTTAAGGTCTCTATGGACTGTGGTATTGTGGAATTAAAAGAGGAAATTGCCAAAAGATTGAAACTAGAGGTGGGAACATTTCATAACAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCATCAGGCGGCAACATAATCAGGCTTGTGGTGCATGATATACTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAAGAGATTGGAAAGGTTGTATATAG 2964 0.4234 MSESKEENPDLLLKSKAQEEHGFVMDFGIGLESLWPLDHISLVSNPMPPFLFSTISEQPFSPVWAFSDAEDERQIRIAASGNTNTTTENPIENDDNKKTVPPLVAMTASENPDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTASLMYMFSVDGENDEILGLPGRVFQHKIPEWTPNVQFYSSKEYQRLNHAQHYNVRGTLALPVFELAGQSCVAVVELIMTSQKINYAPEVDKICKALEAVKLRSSEILEHPYNQICNEYRQYALAEILEILTAVCETHSLPLAQTWVPCKHRSVLAHGGGLKKICSSFNGCCMGQVCMSITEVAFYVIDAHKWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNNTQFCKTEYPLVHYALMFHLNSCFAVCLQSSHTGNDDYVLEFFLPPGITDFNEQKRLLGSILATMKPHFQSLKIASGVELEGNASIEIIDARNERVHLRFESIPITQSSKSPPRHTSPNMGEGLPLEPSEPKIMAYFDGINDGGSLGDNAGGHIDQNTSLEIKTKKKPSDRKRGKAEISISLNVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNHSLSKLKCVIESVHGAEGAFGLNSLSTGSLPIAAGSFSDPFTSNKFHRQTTLTIRPSEPKINENDFDASGASETKRQVAMEDQFLGLEARTRSPEKVINNKGVSIQEIGTKGTNKFRTGSGSSGSGNPTHASCHGSPPNEISPPKDTFVTGNSEQCLVLRGSLGSTTLHSTSTPNRATAYPMLHIVETTEPQEPFGGQLLEVAGSSKDLRNLCPSADAVLEDQVPEAYKMNPECSDLPQMQHMDTLNKTMTPFAVRKEVNSVTIKATYKEDIIRFKVSMDCGIVELKEEIAKRLKLEVGTFHNKYLDDDHEWVLIACDADLQECMDISRSSGGNIIRLVVHDILPILGSSCESSRDWKGCI 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01571 987 MobiDBLite consensus disorder prediction 501 526 - -
Gma16g01571 987 Pfam PB1 domain 888 968 IPR000270 GO:0005515
Gma16g01571 987 SMART PB1_new 887 969 IPR000270 GO:0005515
Gma16g01571 987 PANTHER PROTEIN NLP8 3 982 IPR045012 GO:0003700
Gma16g01571 987 Gene3D - 884 968 - -
Gma16g01571 987 SUPERFAMILY CAD & PB1 domains 886 972 - -
Gma16g01571 987 CDD PB1_NLP 888 968 IPR034891 -
Gma16g01571 987 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 982 - -
Gma16g01571 987 MobiDBLite consensus disorder prediction 734 762 - -
Gma16g01571 987 ProSiteProfiles PB1 domain profile. 887 969 IPR000270 GO:0005515
Gma16g01571 987 ProSiteProfiles RWP-RK domain profile. 562 645 IPR003035 -
Gma16g01571 987 Pfam RWP-RK domain 578 625 IPR003035 -
Gma16g01571 987 MobiDBLite consensus disorder prediction 734 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01571 Gma-Chr16 36129336 36133695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01571 252 980 NLP Transcription Factor Family AT4G24020 50.135 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma16g01571 PB1 2.6e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01571 - - gmx:100797708 1976.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01571 16 36129336 36133695 Gma09g01309 09 35410766 35415255 GST
Gma16g01571 16 36129336 36133695 Gma10g02222 10 49751907 49756953 PCT
Gma16g01571 16 36129336 36133695 Gma20g01498 20 42100601 42105526 PCT
Gma10g02222 10 49751907 49756953 Gma16g01571 16 36129336 36133695 PCT
Gma20g01498 20 42100601 42105526 Gma16g01571 16 36129336 36133695 PCT