Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01565 ATGCCAATTGCAAAACTCAAAGCCTCTGGCACTCCAGATGTGATGAAAACCGAAGACAGAATAGATACCTTAATCAGACAGGCAATTGGCAAAGAACCTTTCATTCCTTTTCCAAGGGCCAGTGAAAGCCCTGTACAGTGGATTCAATTACTCCATGCTTTAGATCCGCAAGGTGTCAGCAATACTTTTTCAGAATTTCCTGGGTGGCCTTTGTTCTCTCCTCTGAAGGTTCAGTTGCAGAAGTGTGACAAATGTTCTCGAGAGTTTTGCTCCCCCGTTAACTATAGAAGACATATACGTGTACATCATCGGTTGAAAAAGCTTGATAAGGATTTTACAAAAACTAAGGATCTTTTAGGAGCATATTGGGATAAGCTCTCCGTAGAAGAGGCAAAGGAAGTTGTATCATTCGAAAATGTGCTGCTGGAGGAAGTTCCAGCTTCTTCAATTTTAAAATCTCTGACAACTTTTATTCAAAACCAAGGATTTTATTCTTTTCCTCAGTATTATCTGATGGCTGGTGCTGCCCTTTTGGATATTGTTCAATCTAAACCTTCCTGCTTTCCTATATCTTCCCAGGAGTTGTTCAGTATCCTTGATGATGCTAGTGAAAATACTTGTTTATGTGGGACAGCAGAATCAATGCAAAGATATGTATTTGATGGAGAGGCTGGAAAAATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAACAGAAATTGGTGAAGGCATGGCTTGCTGACAAGGATGCTGAAGCACTAAGGTGCCAAAAGCAATTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAGAAGCTTAGACAAAAAGAGCAGAAAGCTAGGGAACAAAGACACCAAGCTGAGGCAGAAATTAAAGGCGATATTGACAGTACTGTAAAGGCTTTATCACCGGCAGAAGCATCTTTAGATACATACAATTTTGAAGCTCATAATCCAAGTACATTTTCAGATAACGCAGCTTCACCTGTACCTTTCCAATGTCCTGACACCAGTGAAGAAATAAATGGGGATATTCATTCAGAGTCTGAAACTATCACTGATCAGGATATTGTGAGACAGTCAGCACATGGACATAAACATAAGCGCCAAGCAGTTGCCAGACAACAGGGGCTGCCAAAATTACAATGGGCTGTAGCCAATGGTTTGCATACAAAGCAGAATTCTCCAGTGTCAAAACTTGAAATCAATCAGAAATATGGAACCCACTGTGATCAAAAGGCATCTTCTATAGTTAATGGTAGCAAAGTATGGACTCGGAAGTCTAAAACAGAAATTGACAAGGTGGTTTTAAAAACCATAAAAGAGAAGGAACCAGACCAAGTTAAGAATCAAGAAGTCTTAATAGGATCTATATCTGTTAATCTTAGCAATTGCAGCCAATCAGAGGGTAATATGGTGGCTTCTCAAAAGGACTTCATTGTTGAGAATATGGGAAAGCAGAATATTTCTCGGGATAAGCCAATGAAAACTGATCTTGCCATGGGTGACAACAATCGCTCAACAGTCAAGTTTTGGAGGCCAGTTAGCCGGCTTGAAACTAAAGATCCACTTCCAGTTCAAAGTGGCGGGACAAAAGTTGATGCAGTTCATGAAAATGGTCAAAACTTGTCAGGTCCAAGTTCTTTAAGGGTGTGTACTGCTGCCGGTGGTGATATTGGTTTTGCTAAGTATTTCTCCCATACAGAGGATAAAGCAGATCCAGGAAGCTTCTGGTTCGACATCCAGGCTGCAAAAGCTTTCCTTGCACAAAGGTGGAAGGAAGCTATCTCATCAGAACATGTGACATTGGTTATTTGCCCCGACTCGGAACCTCCTGGGTGCGAGGAGATACAGGATTTGAAAACAGCAGCATGTCAATCTTCTGATATGGATGGATGTGACATTGTGGCAAATGCAGATAAAAGATTGCCTGCAACCTCCAAAGTTGCGAAATCCAAACCCAGGTTGAAGAAGTCTGAAAAGGGAACCAAGATAAAGTATATTCCAAAACAGAAGACAAATACCTAG 2073 0.412 MPIAKLKASGTPDVMKTEDRIDTLIRQAIGKEPFIPFPRASESPVQWIQLLHALDPQGVSNTFSEFPGWPLFSPLKVQLQKCDKCSREFCSPVNYRRHIRVHHRLKKLDKDFTKTKDLLGAYWDKLSVEEAKEVVSFENVLLEEVPASSILKSLTTFIQNQGFYSFPQYYLMAGAALLDIVQSKPSCFPISSQELFSILDDASENTCLCGTAESMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKQLVEEEEAAQKRQAEILERKRQKKLRQKEQKAREQRHQAEAEIKGDIDSTVKALSPAEASLDTYNFEAHNPSTFSDNAASPVPFQCPDTSEEINGDIHSESETITDQDIVRQSAHGHKHKRQAVARQQGLPKLQWAVANGLHTKQNSPVSKLEINQKYGTHCDQKASSIVNGSKVWTRKSKTEIDKVVLKTIKEKEPDQVKNQEVLIGSISVNLSNCSQSEGNMVASQKDFIVENMGKQNISRDKPMKTDLAMGDNNRSTVKFWRPVSRLETKDPLPVQSGGTKVDAVHENGQNLSGPSSLRVCTAAGGDIGFAKYFSHTEDKADPGSFWFDIQAAKAFLAQRWKEAISSEHVTLVICPDSEPPGCEEIQDLKTAACQSSDMDGCDIVANADKRLPATSKVAKSKPRLKKSEKGTKIKYIPKQKTNT 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01565 690 Coils Coil 256 305 - -
Gma16g01565 690 ProSitePatterns Zinc finger C2H2 type domain signature. 82 103 IPR013087 -
Gma16g01565 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Gma16g01565 690 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 689 - -
Gma16g01565 690 MobiDBLite consensus disorder prediction 661 690 - -
Gma16g01565 690 SMART c2h2final6 80 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01565 Gma-Chr16 36065956 36075941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01565 19 687 C2H2 Transcription Factor Family AT4G25610 40.441 4.82e-141 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma16g01565 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01565 - - gmx:100809067 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01565 16 36065956 36075941 Gma09g01302 09 35326168 35328718 GST
Gma16g01565 16 36065956 36075941 Gma10g02215 10 49702016 49707610 PCT
Gma16g01565 16 36065956 36075941 Gma20g01506 20 42134206 42154289 PCT
Gma10g02215 10 49702016 49707610 Gma16g01565 16 36065956 36075941 PCT
Gma20g01506 20 42134206 42154289 Gma16g01565 16 36065956 36075941 PCT