Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01559 ATGCCTTCATGGTGGGGAAAATCATCATCAACCAAGAAGAAAGCAAATAAGGAAAGTTTTATTGATGCATTTCACCGAAAATTTAAAATCCCATCCGAAGGTAAACCAAGCGGTAGATCTGGAGGATCTCGTAGACATTGCGATGATTCAATTTCAGAGAAAGGGGCTCAGTCTCCTCCTGAATCAAGATCTCCTTCTCCTTCCAAGGTGGGAAGGTGTCAAAGCTTTGTTGAAAGGCCTCATGCTCAGCCACTACCACTTCCTGGCTTGCACCCATCAAATATAAGCCGAGCAGATTCCGAAATTAGTATACCATCATCTAGAAGAAGACATGGAAAGGGCTCCAAATCATCGTTGTTTCTTCCACTACCAAAACCAGCGTGCATGCGTGGTAGGTTGAACCCTGCTGAGTTGGATGGAGATTTGGTCACGGCTTCAGTCTCTAGTGAGAGCTCTGCTGATAGTGATGAACCAGTGGACTCTCACAATCGTAGTCCTCTGGCAACTGACTGTGAAACTGGGACTAGAACTGCTGCAGGCAGTCCCTCCAGCTTGATGCAGAAGGATCAATCATCTACTGTTTCCCAAATAAACTCAAGGGAAGCCAAAAAACCGGCAAATATTCTGGGTAATCATATGTCTTCTACTTCACCAAAACGTAGGCCCTTAAGCAACCATGTTACAAATCTGCAGATTCCTCCTCATGGTGCCTTCTTCAGTGCGCCTGACAGTTCAAGATCAAGTCCATCAAGAAGTCCATTGAGAGCATTTGGTACCGAACAGGTGTTGAACTCTGCTTTTTGGGCCGGGAAGCCATATCCAGAGGTCAATTTTGGTGGATCTGGCCACTGCTCAAGTCCTGGTTCTGGTCACAATTCTGGGCATAATTCAATGGGAGGGGACATGTCAGGACAGTTATTTTGGCAACCTAGCAGGGGTAGCCCAGAATATTCCCCCGTACCTAGTCCCAGAATGACTAGCCCTGGTCCAAGCTCTAGAATTCAGAGTGGAGCTGTTACACCTATTCATCCAAGAGCTGGGGGAACACCCAATGAATCACAGACAGGAAGGATTGATGATGTAAAACCACAGAGTCATCGTTTGCCCCTTCCTCCCTTAGCAGTTACAAATACTTTGCCTTTCTCTCATTCAAATTCTGCAGCAACTTCTCCATCTATGCCAAGAAGTCCAGGAAGAGCAGATAATCCAATTAGCCCTGGATCACGTTGGAAAAAAGGAAAGCTGCTTGGCAGAGGCACATTTGGACATGTCTATGTTGGCTTTAATAAGGAAAGTGGTGAAATGTGTGCTATGAAAGAGGTAACTCTTTTTTCAGATGATGCCAAATCTAAAGAGAGTGCTAAGCAATTAATGCAGGAAATTACCTTGTTGAGCCGGTTACGACATCCAAATATTGTGCAGTATTATGGTTCTGAAACAGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTGTCAGGACTTGCTTATTTACATGCTAAAAATACTGTCCACAGGGACAtcaaaggagcaaatatactggtagatactaatggccgggttaagttggcagactttggcatggcaaagcatATAACAGGGCAATCATGtccattatcattcaagggaagcccttattggatggctcctgaggttataaaaaactctaatggttgcaacctagctgttgatatatggagccttggatgcacagttttggaaatggctacaactaaacctccttggagtcagtatgaagggGTTGCTGCCATGTTTAAGATTGGTAATAGCAAGGAACTCCCAACAATCCCAGATCATCTCTCCAGTGAAGGAAAGGATTTTGTTAGGAAATGCCTACAACGTAATCCACACAATCGCCCTTCAGCCAGTGAATTATTGGACCACCCTTTTGTAAAATGTGCTGCACCTTTAGAAAGACCTATTCTGGGTCCTGAGTCTCCTTCAGACCCAGCACCAGCAGTATCGGGGATCACACAAGGAGCGACAGCTTCGGGCATTGGGCAAGGAAGGAATCCGTCCAAGTTGGATTCAGATCGACTTTCTCTTCATTCTTCTAGGTTTTTGAAAACTAATCCCCatgcaagTGAAATCCATATTCCAAGGAATATATCTTGCCCTGTTTCACCCATTGGAAGCCCACTTTTGAGGCCAAGATCACCACAACACATGAATGGGCGAATGTCTCCCTCTCCTATATCTAGCCCTCGGACTGCTTCTGGTGCATCCACGCCTCTTAATGGTGGTAGCGGTGCCATTCCATTTAGTAATCACTTAGTTTACATTCAAGAGGGTCTTGGAAACTTGCCAAAATCTTCAAATGGTGTCTACGTTAGTGGCCCTGCTCATCATGACTTGAATGTTGACATTTTTCGAGGAATGCAACAGACATCTCACATTACATCAGAACTGGTTCCAAGTGAAAGTGATGTTCTGGGGAAGCAGTTTGCACGGACTCCTCATAATGAGCCGTATGATGTTCAATCAGTCTTGGCTGACCGTGTTTGCCGGCAGCTGCTGGGGGATAATGTGAAAATTAACCAATGCCTTGATCTAAGTCCCAACTCTTTGCTCAGCCGGGCTAATGGTTTATGA 2697 0.409 MPSWWGKSSSTKKKANKESFIDAFHRKFKIPSEGKPSGRSGGSRRHCDDSISEKGAQSPPESRSPSPSKVGRCQSFVERPHAQPLPLPGLHPSNISRADSEISIPSSRRRHGKGSKSSLFLPLPKPACMRGRLNPAELDGDLVTASVSSESSADSDEPVDSHNRSPLATDCETGTRTAAGSPSSLMQKDQSSTVSQINSREAKKPANILGNHMSSTSPKRRPLSNHVTNLQIPPHGAFFSAPDSSRSSPSRSPLRAFGTEQVLNSAFWAGKPYPEVNFGGSGHCSSPGSGHNSGHNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPNESQTGRIDDVKPQSHRLPLPPLAVTNTLPFSHSNSAATSPSMPRSPGRADNPISPGSRWKKGKLLGRGTFGHVYVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDKLYIYLEYVAGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDTNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDHLSSEGKDFVRKCLQRNPHNRPSASELLDHPFVKCAAPLERPILGPESPSDPAPAVSGITQGATASGIGQGRNPSKLDSDRLSLHSSRFLKTNPHASEIHIPRNISCPVSPIGSPLLRPRSPQHMNGRMSPSPISSPRTASGASTPLNGGSGAIPFSNHLVYIQEGLGNLPKSSNGVYVSGPAHHDLNVDIFRGMQQTSHITSELVPSESDVLGKQFARTPHNEPYDVQSVLADRVCRQLLGDNVKINQCLDLSPNSLLSRANGL 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01559 898 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 815 - -
Gma16g01559 898 MobiDBLite consensus disorder prediction 24 52 - -
Gma16g01559 898 MobiDBLite consensus disorder prediction 55 71 - -
Gma16g01559 898 MobiDBLite consensus disorder prediction 677 713 - -
Gma16g01559 898 MobiDBLite consensus disorder prediction 687 710 - -
Gma16g01559 898 MobiDBLite consensus disorder prediction 758 783 - -
Gma16g01559 898 CDD STKc_MEKK1_plant 409 666 - -
Gma16g01559 898 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01559 898 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Gma16g01559 898 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 815 - -
Gma16g01559 898 MobiDBLite consensus disorder prediction 284 312 - -
Gma16g01559 898 MobiDBLite consensus disorder prediction 24 254 - -
Gma16g01559 898 Gene3D Transferase(Phosphotransferase) domain 1 408 676 - -
Gma16g01559 898 MobiDBLite consensus disorder prediction 209 231 - -
Gma16g01559 898 MobiDBLite consensus disorder prediction 166 202 - -
Gma16g01559 898 SUPERFAMILY Protein kinase-like (PK-like) 408 750 IPR011009 -
Gma16g01559 898 MobiDBLite consensus disorder prediction 743 783 - -
Gma16g01559 898 SMART serkin_6 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01559 898 MobiDBLite consensus disorder prediction 377 396 - -
Gma16g01559 898 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma16g01559 898 MobiDBLite consensus disorder prediction 284 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01559 Gma-Chr16 35995374 36003057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01559 4 888 MAP Kinase Kinase Kinase AT1G63700 59.730 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma16g01559 Pkinase 2.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01559 K20717 - gmx:100792783 1723.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01559 16 35995374 36003057 Gma09g01293 09 35163708 35169240 GST
Gma16g01559 16 35995374 36003057 Gma10g02210 10 49666330 49672454 PCT
Gma20g01511 20 42179336 42187183 Gma16g01559 16 35995374 36003057 PCT