Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01550 ATGTCCTCGTCGGGGTTCCCTGGCGGCGGTGGTGCGTCGGAGTTTTTCGCCGGGGTAGGTGGTTTCGGCGGCAGATCCATTCCGGCGACCAGCATGAACAACCCCAACGCCGCCGCCTCCGCCACCAACAACAACCTCCACCCTCTCTACCGAACCcaacaacaacaacaacaacaacaacaacaGAACCTCCCCGCAATGTTTCTAGATCCTTCCTCGCAGATCGCCCAACGGCAAACACCAACCCTAATCGGTAAACGTACCCTAACCGAATTCCAAGCCTACAACCAAACCAACAACAACCCAAACCACGTCCTCTCCAACCTCCTGCTTCGTACCGTTAAGCCCCGAACCACTTTCTCCCATAACCATATGGACTTTCCCGTTCCTGAATTGCAAAGCCAAAACCTTTATGCCAACCAAACGCAGCGTTTTGGTGTTCCGTTACTTCACCAGCTCCGCCCTCAGCCCATTAATCTCCCCAACAACGGGCCCGTGCCCATGACAGGCCCAAATTTTGGCTACCGGAACTCGAATTTGGGTTTTCCACCAAACCAGAACCGGGTTCGTGTTTCTCCTCCTGTTTCTGTTCCGGTTCAGGTTCAGTCATCTGAACCGGAAAAGAAGATCATGGACCACAGGCTTCTTGAATTGGAGAAGCAGCTTCTGGAAGATAACGACGAAGAAGGAGAAGCAGATGCTGCGTCTGTGATAACCACGAGCGAGTGGTCCGAGACTTATCAGAATTTAATCAGTCCCGGTCCGGTTCAGAAACCGGTTTTGACGACCACGTCGCCGACTTCGTCGACGACGTCATCCACGTCATCTTCTTCCTCCGTGGCTTCGCCTGCTTCCGGATGCTCCAAGCAAACTCTCATGGAAGCCGCATCTGCAATTGTTGAAGGAAAACATGATGTTGCAGCGGAGATCCTCAACCGGTTGAACGGTGTGAACCGGAGTGATAGGTTAACGGATTGCATGGTTTCGGCGTTGAAATCGAGGATGAATCCGGGGGAGCATCCTCCGCCGGTGGCGGAGCTTTTCAGAAAGGAGCACGCCGAGTCGTCTCAGCTGCTTTTGGATAACTCAGTGTGCTTCAAGGTAGGGTTCATGGCGGCGAATTACGCGATTCTGGAAGCCGCATTTGAGGAGAAAACGGAGAATAACAGGTTCTGCGTGGTGGATTTTGAGATTGGAAAGGGAAAGCAGTATTTGCACCTCCTCAACGCGCTCTCGGCGCGTGACCAGAACGCGGTGGTGAAGATCGCGGCTGTGGCGGAGAACGGCGGCGAGGAGAGAGTGCGCGCCGTGGGAGACATGCTGAGTCTACTCGCAGAGAAGCTGAGGATCAGGTTCGAGTTCAAGATCGTCGCGACTCAGAAAATCACCGAGTTGACTCGCGAGTCGCTGGGATGCGAAGTGGACGAGGTTCTCATGGTGAACTTCGCGTTCAACCTGAACAAGATTCCCGACGAGAGCGTCTCCACGGAGAATCCTCGGGACGAGCTCCTGCGGCGCGTGAAGCGTCTGGCGCCGCGCGTGGTGACAATTGTGGAGCAGGAGATAAACGCAAACACGGCGCCGTTTTTGGCGCGCGTGGCGGAGACGCTGTCGTATTACAGCGCGTTGTTGGAGTCCATTGAGGCCACCACTGCAGGGAGAGAAAATAACAATAACAACCTAGACCGAGTCAGACTCGAGGAGGGACTGAGTCGAAAATTGCATAACTCGGTGGCGTGCGAAGGAAGAGATCGCGTGGAACGGTGTGAAGTGTTTGGAAAATGGCGCGCGCGTATGAGCATGGCGGGGTTCGAGTTAAAACCACTGAGTCAAAGCATGGCCGAGTCAATAAAATCGCGACTCACCACGGCCAACAACCGAGTCAACTCGGGACTGACTGTAAAAGAAGAGAACGGAGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACGGTCGCATCTGCTTGGCGTTAA 1974 0.5365 MSSSGFPGGGGASEFFAGVGGFGGRSIPATSMNNPNAAASATNNNLHPLYRTQQQQQQQQQQNLPAMFLDPSSQIAQRQTPTLIGKRTLTEFQAYNQTNNNPNHVLSNLLLRTVKPRTTFSHNHMDFPVPELQSQNLYANQTQRFGVPLLHQLRPQPINLPNNGPVPMTGPNFGYRNSNLGFPPNQNRVRVSPPVSVPVQVQSSEPEKKIMDHRLLELEKQLLEDNDEEGEADAASVITTSEWSETYQNLISPGPVQKPVLTTTSPTSSTTSSTSSSSSVASPASGCSKQTLMEAASAIVEGKHDVAAEILNRLNGVNRSDRLTDCMVSALKSRMNPGEHPPPVAELFRKEHAESSQLLLDNSVCFKVGFMAANYAILEAAFEEKTENNRFCVVDFEIGKGKQYLHLLNALSARDQNAVVKIAAVAENGGEERVRAVGDMLSLLAEKLRIRFEFKIVATQKITELTRESLGCEVDEVLMVNFAFNLNKIPDESVSTENPRDELLRRVKRLAPRVVTIVEQEINANTAPFLARVAETLSYYSALLESIEATTAGRENNNNNLDRVRLEEGLSRKLHNSVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQSMAESIKSRLTTANNRVNSGLTVKEENGGICFGWMGRTLTVASAWR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01550 657 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 78 656 IPR005202 -
Gma16g01550 657 ProSiteProfiles GRAS family profile. 279 657 IPR005202 -
Gma16g01550 657 PANTHER SCARECROW-LIKE PROTEIN 8 78 656 IPR030013 -
Gma16g01550 657 Pfam GRAS domain family 289 657 IPR005202 -
Gma16g01550 657 MobiDBLite consensus disorder prediction 250 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01550 Gma-Chr16 35838827 35841194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01550 43 657 GRAS Transcription Factor Family AT5G52510 46.818 7.50e-153 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma16g01550 GRAS 2.4e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01550 - - gmx:100788551 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01550 16 35838827 35841194 Gma09g01274 09 34661290 34663837 GST
Gma16g01550 16 35838827 35841194 Gma10g02203 10 49597538 49599310 PCT
Gma16g01550 16 35838827 35841194 Gma20g01518 20 42226137 42228391 PCT
Gma10g02203 10 49597538 49599310 Gma16g01550 16 35838827 35841194 PCT
Gma20g01518 20 42226137 42228391 Gma16g01550 16 35838827 35841194 PCT