Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01548 ATGGATCCCAATGATGATAGGGGTGAAAGTAGACTCTATATTGGTAACCTTGATCTTAGAATTACAGAAGCTGCTCTGCTTAAAATGTTTTCTCCTTATGGAAAGATAATTTCCGAGGACTTCTTATGGCACACACGAGGCCCAAAACGCGGGGAGCCACGTGGTTTTGCTTTTATCCAGTACAGCACAAAAGAGGAAGCAGAATTAGCCAAGGAGAAGATGCATGGGAGGTTAGCTTGCGGCCGGCCATTGTTTGTTCGTCTTGCTGGTGAAAAGTTCATGTTGGAAACAGCTGATAACTCTACAAAAGCAGCTGGTGAAGGGCACAAGATGCATCTCACTGGTGGTGGTGGTGCCATGGGACAAACAAGTCGACATGCCAAAATAGCTGCTATAAAAAACAAATTGAAATCCTTAGAGGAGGAGAGTTCTAGGTCCAAGAAACAAAAGCGAAGTGACAATATTTCTTGA 471 0.4374 MDPNDDRGESRLYIGNLDLRITEAALLKMFSPYGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAELAKEKMHGRLACGRPLFVRLAGEKFMLETADNSTKAAGEGHKMHLTGGGGAMGQTSRHAKIAAIKNKLKSLEEESSRSKKQKRSDNIS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01548 156 PANTHER RNA-BINDING PROTEIN 18-RELATED 5 152 - -
Gma16g01548 156 SMART rrm1_1 11 87 IPR000504 GO:0003723
Gma16g01548 156 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 152 - -
Gma16g01548 156 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Gma16g01548 156 MobiDBLite consensus disorder prediction 101 156 - -
Gma16g01548 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 83 IPR000504 GO:0003723
Gma16g01548 156 MobiDBLite consensus disorder prediction 133 156 - -
Gma16g01548 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 91 IPR000504 GO:0003723
Gma16g01548 156 Gene3D - 8 100 IPR012677 -
Gma16g01548 156 CDD RRM_RBM18 11 89 IPR039157 -
Gma16g01548 156 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01548 Gma-Chr16 35818502 35820570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01548 10 92 Eukaryotic Initiation Factors Gene Family AT1G71770 39.759 1.47e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01548 K24527 - gmx:100804800 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01548 16 35818502 35820570 Gma16g01548 16 35818502 35820570 ECH
Gma16g01548 16 35818502 35820570 Gma09g01269 09 34591549 34592689 GST