Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01542 ATGGCGGTAGGACTCTCCGCCGCCATAACCATGAAGTCCCTCCTCCGTTTCCACCAACCTCACCTGAACCTCCCCAAATCAATCCCAACAACACTCCCTTTCTCCCCCATGAGAATTTTCCACCACACAGCATCACCAAGAACCCAAAAAGTTTCAACTTTCACCGTTTGTGTCCTCATGCAGGACCCAAAACAAGGCACCCACATGGAAATTGAGCCACAAGAACAACCTCCTCCTCCTCCTCCTCCTCCCGCTCAACAAGTTCTGTCACCAAAGTTGGCTGAGAAATTGGCCAGAAAAGAGTCTGAGAGGTTCACTTACCTTGTTGCTGCTGTCATGTCTAGCTTCGGCATCACATCCATGGCAGTGTTCGCTGTTTATTGCAGATTCTCGTGGCAAATGGAGGGTGGAGAAGTGCCTTGGTCTGAAATGTTTGGCACATTTGCTCTATCAGTGGGAGCTGCTGTGGGTATGGAATTTTGGGCTAGATGGGCTCATAGGGCTCTCTGGCATGCTTCGCTGTGGCACATGCATGAGTCCCACCATCGACCAAGAGAAGGACCCTTCGAGCTTAACGATGTATTTGCAATAATCAACGCTGTCCCTGCCATCGCTCTCCTTTCCTATGGTTTCTTTAACAAGGGACTGGTCCCTGGCCTTTGCTTTGGTGCGGGTCTTGGAATTACGGTCTTTGGGATGGCCTACATGTTTGTACACGATGGATTGGTTCATAAGAGATTCCCGGTGGGCCCCATTGCAAACGTGCCCTATCTCAGAAGGGTGGCCTCTGCTCACCAACTTCACCATTCGGAAAAATTCAATGGAGTGCCATATGGGCTGTTTTTGGGACCCAAGGAAATTGAAGAGGTGGGAGGGCTAGAAGAGCTGGAGAAAGAGATAAGTAGGAGAGCAAGATCATACAAAATAGCTAATGAGAACAACTAA 945 0.4942 MAVGLSAAITMKSLLRFHQPHLNLPKSIPTTLPFSPMRIFHHTASPRTQKVSTFTVCVLMQDPKQGTHMEIEPQEQPPPPPPPPAQQVLSPKLAEKLARKESERFTYLVAAVMSSFGITSMAVFAVYCRFSWQMEGGEVPWSEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRRVASAHQLHHSEKFNGVPYGLFLGPKEIEEVGGLEELEKEISRRARSYKIANENN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01542 314 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 3 307 IPR045019 GO:0016491
Gma16g01542 314 MobiDBLite consensus disorder prediction 73 88 - -
Gma16g01542 314 Pfam Fatty acid hydroxylase 154 281 IPR006694 GO:0005506|GO:0008610|GO:0016491
Gma16g01542 314 MobiDBLite consensus disorder prediction 69 89 - -
Gma16g01542 314 PANTHER BETA-CAROTENE HYDROXYLASE 3 307 - -
Gma16g01542 314 Coils Coil 293 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01542 Gma-Chr16 35769939 35772668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01542 1 224 Chloroplast and Mitochondria Gene Families AT4G25700 60.619 3.33e-91 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01542 K15746 - gmx:100785541 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01542 16 35769939 35772668 Gma09g01261 09 34411572 34414253 GST
Gma16g01542 16 35769939 35772668 Gma10g02197 10 49536197 49545595 PCT
Gma16g01542 16 35769939 35772668 Gma20g01523 20 42270346 42273998 PCT
Gma10g02197 10 49536197 49545595 Gma16g01542 16 35769939 35772668 PCT
Gma20g01523 20 42270346 42273998 Gma16g01542 16 35769939 35772668 PCT