Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01538 ATGGTATCCAAAAACCCGAACCCGCCCGAGGGATTCTACTTGGATCCCAGTGGTGGCATGCCTCTTCCTGGGATGCCTCCCTTCGCCTCCGTCTCCGCCGCAACCGCTGCGAACTCGCCGGAGGACGCCGCCAAGAAGATCCGCAAGCCCTACACCATCACCAAGTCGCGGGAGAACTGGACCGAACCCGAACACGACAAGTTCCTCGAAGCAATTCAACTgtttgatcgtgattggaaaaagattgaagcatttgttggatcaaagagtgttatacagATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCACCACCCCGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAATGCTCCAGTACTCTCACAAGTATCCGGACGTTTTCAGTCTTCATCTGCTTTGCTTGAACCTGGATATATCTTGAAGAATGATGCCCCACCAATGCTTAAAACTCCTATTATGAACACTGTTGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTGTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGTGGCCAGTTGGTGAATCTAATTGTCAAGGGAATAAAATCCATCCATTGAGAGTTCTTCCAGATTTTACTCAGGTATATGGCTTCATTGGCAGTGTATTTGACCCAAATGCAACTGAGCATCTGCAGAAACTAAAAAAGATGGACCGCATAGATGTTGAGACGGTGCTACTGTTAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGGATCATAGAAAGCTGCTTTCATCATATGAAGTTGAACCAGAGAGAGATGATAACTATCAACGCGGATAG 906 0.4349 MVSKNPNPPEGFYLDPSGGMPLPGMPPFASVSAATAANSPEDAAKKIRKPYTITKSRENWTEPEHDKFLEAIQLFDRDWKKIEAFVGSKSVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPVLSQVSGRFQSSSALLEPGYILKNDAPPMLKTPIMNTVASSWSNNTLQTANLSPVTKVNNPCSSGESTPKVWPVGESNCQGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEVEPERDDNYQRG 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01538 301 Gene3D - 59 107 - -
Gma16g01538 301 CDD SANT 59 102 IPR001005 -
Gma16g01538 301 SMART sant 56 104 IPR001005 -
Gma16g01538 301 ProSiteProfiles SANT domain profile. 55 106 IPR017884 -
Gma16g01538 301 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Gma16g01538 301 PANTHER SWI/SNF COMPLEX-RELATED 3 297 - -
Gma16g01538 301 Pfam Myb-like DNA-binding domain 57 102 IPR001005 -
Gma16g01538 301 MobiDBLite consensus disorder prediction 107 138 - -
Gma16g01538 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 55 104 IPR006447 GO:0003677
Gma16g01538 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Gma16g01538 301 SUPERFAMILY Homeodomain-like 51 107 IPR009057 -
Gma16g01538 301 PANTHER PROTEIN REVEILLE 6 3 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01538 Gma-Chr16 35741107 35748310 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma16g01538 Myb_DNA-binding 4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01538 - - gmx:100783949 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01538 16 35741107 35748310 Gma09g01255 09 34249456 34257360 GST
Gma16g01538 16 35741107 35748310 Gma10g02193 10 49502266 49507519 PCT
Gma16g01538 16 35741107 35748310 Gma20g01526 20 42283599 42289582 PCT
Gma10g02193 10 49502266 49507519 Gma16g01538 16 35741107 35748310 PCT
Gma20g01526 20 42283599 42289582 Gma16g01538 16 35741107 35748310 PCT